Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000006A_C02 KMC000006A_c02
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179232.1| hypothetical protein; protein id: At2g16390.1 [... 150 1e-35
gb|AAM15781.1|AC104428_2 Hypothetical protein [Oryza sativa (jap... 130 9e-30
ref|NP_179740.1| hypothetical protein; protein id: At2g21450.1 [... 117 8e-26
ref|NP_197542.1| putative protein; protein id: At5g20420.1 [Arab... 54 1e-06
ref|NP_189853.1| putative protein; protein id: At3g42670.1 [Arab... 54 2e-06
>ref|NP_179232.1| hypothetical protein; protein id: At2g16390.1 [Arabidopsis thaliana]
gi|25411706|pir||G84539 hypothetical protein At2g16390
[imported] - Arabidopsis thaliana
gi|4544390|gb|AAD22300.1| hypothetical protein
[Arabidopsis thaliana]
Length = 888
Score = 150 bits (379), Expect = 1e-35
Identities = 69/93 (74%), Positives = 78/93 (83%)
Frame = -1
Query: 585 LNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGD 406
LNPSVTRQAIGRAFRPGQ K V YRLIA SPEE+DH TCFKKE+ISKMWFEWNEYCG
Sbjct: 796 LNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMWFEWNEYCGY 855
Query: 405 RAFQVETVSVNECGDEFLETPMLGEDVKALYKR 307
+ F+VET+ V+E GD FLE+P L ED++ LYKR
Sbjct: 856 QNFEVETIDVDEAGDTFLESPALREDIRVLYKR 888
>gb|AAM15781.1|AC104428_2 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 130 bits (328), Expect = 9e-30
Identities = 60/94 (63%), Positives = 73/94 (76%)
Frame = -1
Query: 588 HLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCG 409
H NPSV RQAIGRA+RPGQ+K V+ YRL+AADSPEEDDH T FKKE +SK+WFEWNE C
Sbjct: 1104 HENPSVMRQAIGRAYRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSKLWFEWNELCS 1163
Query: 408 DRAFQVETVSVNECGDEFLETPMLGEDVKALYKR 307
F++ TV V++ D FLE+ L +D+KAL KR
Sbjct: 1164 SDDFELATVDVSDSEDRFLESSALKQDIKALLKR 1197
>ref|NP_179740.1| hypothetical protein; protein id: At2g21450.1 [Arabidopsis thaliana]
gi|25412041|pir||D84601 hypothetical protein At2g21450
[imported] - Arabidopsis thaliana
gi|4567276|gb|AAD23689.1| hypothetical protein
[Arabidopsis thaliana]
Length = 816
Score = 117 bits (294), Expect = 8e-26
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = -1
Query: 588 HLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCG 409
HLNPSVT+QA+ RA+RPGQ +KV+ Y+L+AADSPEE+++ TC +KE++SKMWFEWN G
Sbjct: 721 HLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFEWNVGSG 780
Query: 408 DRAFQVETVSVNECGDEFLETPMLGEDVKALYKR 307
F + + GD FLET + ED+K LY +
Sbjct: 781 REDFGFRAIDADHSGDAFLETTKMKEDIKCLYTK 814
>ref|NP_197542.1| putative protein; protein id: At5g20420.1 [Arabidopsis thaliana]
Length = 1261
Score = 53.9 bits (128), Expect = 1e-06
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = -1
Query: 582 NPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDR 403
NPS T+QAI RAFRPGQ K V+VY+L++ + EED + KE +S M F
Sbjct: 1166 NPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIFSEEFVADPS 1225
Query: 402 AFQVETVSVNECGDEFLETPMLGED 328
+Q E + D+ L ++GED
Sbjct: 1226 LWQAEKIE-----DDILR-EIVGED 1244
>ref|NP_189853.1| putative protein; protein id: At3g42670.1 [Arabidopsis thaliana]
gi|11357995|pir||T47325 hypothetical protein T12K4.120 -
Arabidopsis thaliana gi|7523392|emb|CAB86450.1| putative
protein [Arabidopsis thaliana]
Length = 1256
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/51 (52%), Positives = 35/51 (67%)
Frame = -1
Query: 582 NPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWF 430
NPS T+QAI RAFRPGQ K V+VY+L++ + EED + KE +S M F
Sbjct: 1160 NPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIF 1210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,988,989
Number of Sequences: 1393205
Number of extensions: 9687218
Number of successful extensions: 31273
Number of sequences better than 10.0: 372
Number of HSP's better than 10.0 without gapping: 30121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31240
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
