Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000004A_C01 KMC000004A_c01
(1044 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199109.1| putative protein; protein id: At5g42950.1 [Arab... 266 4e-70
pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana ... 50 8e-05
ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabi... 50 8e-05
dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-grou... 44 0.003
ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabi... 44 0.003
>ref|NP_199109.1| putative protein; protein id: At5g42950.1 [Arabidopsis thaliana]
gi|9758584|dbj|BAB09197.1|
gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein
[Arabidopsis thaliana]
Length = 1714
Score = 266 bits (680), Expect = 4e-70
Identities = 149/262 (56%), Positives = 183/262 (68%), Gaps = 6/262 (2%)
Frame = -2
Query: 1025 ARSSGPSWTVSASSPSKAAPSGQINSQASQSKHKGDDDLFWGPVEQSKLENKQSGFPQLA 846
A G SW+ SASSPS+A ++ +SQSK KGDDDLFWGPVEQS + KQ FP L
Sbjct: 1462 AHQGGASWSRSASSPSQA-----VSQSSSQSKSKGDDDLFWGPVEQSTQDTKQGDFPHLT 1516
Query: 845 SQGSWGSKNVPVKGNSPGPLNRQKSGSSKLTEQSLSASPASSQSLLKSKKDAMTKNSEAM 666
SQ SWG+KN P K N+ LNRQKS S ++ LS SP +Q+ K KK+A+TK +EA
Sbjct: 1517 SQNSWGTKNTPGKVNAGTSLNRQKSVSMGSADRVLS-SPVVTQASHKGKKEAVTKLTEAN 1575
Query: 665 DFRVWCENECVRLIGTKDTSFLEFCLKQSRSEAEMFLIENLGTYDPDHEFIEKFLNYMEL 486
FR WC++EC+RL+G++DTS LEFCLK SRSEAE LIENLG+ DPDH+FI+KFLNY +L
Sbjct: 1576 GFRDWCKSECLRLLGSEDTSVLEFCLKLSRSEAETLLIENLGSRDPDHKFIDKFLNYKDL 1635
Query: 485 LPPDVLKIAFQTQNDG----EVAGGMISGNADLRAMGHTEVSVSKGGKKGKKGKKV--SA 324
LP +V++IAFQ++ G G N G ++V G KK KKGKKV SA
Sbjct: 1636 LPSEVVEIAFQSKGSGVGTRNNTGEDYYYNTTAANDGFSKVG---GKKKAKKGKKVSLSA 1692
Query: 323 AVLGFNVVSNRIMMGEIQTVED 258
+VLGFNVVSNRIMMGEIQT+ED
Sbjct: 1693 SVLGFNVVSNRIMMGEIQTIED 1714
>pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana
gi|9802542|gb|AAF99744.1|AC004557_23 F17L21.22
[Arabidopsis thaliana]
Length = 1475
Score = 49.7 bits (117), Expect = 8e-05
Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 3/40 (7%)
Frame = -2
Query: 368 SKGG---KKGKKGKKVSAAVLGFNVVSNRIMMGEIQTVED 258
SKGG KKGKKG+++ A+LGF V SNRI+MGEI +D
Sbjct: 1435 SKGGGGKKKGKKGRQIDPALLGFKVTSNRILMGEIHRADD 1474
>ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabidopsis thaliana]
Length = 1453
Score = 49.7 bits (117), Expect = 8e-05
Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 3/40 (7%)
Frame = -2
Query: 368 SKGG---KKGKKGKKVSAAVLGFNVVSNRIMMGEIQTVED 258
SKGG KKGKKG+++ A+LGF V SNRI+MGEI +D
Sbjct: 1413 SKGGGGKKKGKKGRQIDPALLGFKVTSNRILMGEIHRADD 1452
>dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-group)]
gi|20161927|dbj|BAB90838.1| P0592G05.24 [Oryza sativa
(japonica cultivar-group)]
Length = 1530
Score = 44.3 bits (103), Expect = 0.003
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = -2
Query: 356 KKGKKGKKVSAAVLGFNVVSNRIMMGEIQTVED 258
KK KKGK++ ++LGF V SNRIMMGEI ++D
Sbjct: 1498 KKTKKGKQIDPSLLGFKVHSNRIMMGEIHRLDD 1530
>ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabidopsis thaliana]
gi|7486371|pir||T00661 hypothetical protein F3I6.24 -
Arabidopsis thaliana gi|2829883|gb|AAC00591.1| Unknown
protein [Arabidopsis thaliana]
Length = 1417
Score = 44.3 bits (103), Expect = 0.003
Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Frame = -2
Query: 368 SKGG---KKGKKGKKVSAAVLGFNVVSNRIMMGEIQTVED 258
SKGG KKGKKG+++ A+LGF V SNRI MGEI +D
Sbjct: 1378 SKGGGGKKKGKKGRQIDPALLGFKVTSNRI-MGEIHRADD 1416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 876,042,118
Number of Sequences: 1393205
Number of extensions: 18926277
Number of successful extensions: 54682
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 51356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54539
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61532797421
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
