Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000003A_C01 KMC000003A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK31196.1|AF349511_1 general amidase-B [Aspergillus fumigatus] 36 0.49
gb|ZP_00023022.1| hypothetical protein [Ralstonia metallidurans] 36 0.49
ref|XP_231276.1| similar to 5-AMP-activated protein kinase, gamm... 36 0.49
ref|NP_189200.1| hypothetical protein; protein id: At3g25720.1 [... 32 9.3
dbj|BAA97453.1| streptococcal hemagglutinin [Streptococcus gordo... 32 9.3
>gb|AAK31196.1|AF349511_1 general amidase-B [Aspergillus fumigatus]
Length = 550
Score = 35.8 bits (81), Expect = 0.49
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = -1
Query: 561 DSPVPAENK-ADDYEASVVARFHILKSRAEDSSSVSSQEKLSDGVGFSGQRMYDSSISEN 385
D+ +P+E + +DD+ ASV A H++++ S + S ++L FS + +N
Sbjct: 23 DAQIPSEWRLSDDFRASVPADGHLIEADIARRSGILSDKELDITENFSAVELL-----KN 77
Query: 384 ASEGKRMNVDLNSSYAARGQVNLERVSC 301
+E K VD+ +++ R + + SC
Sbjct: 78 LAERKFSAVDVTTAFCKRAAIAQQLTSC 105
>gb|ZP_00023022.1| hypothetical protein [Ralstonia metallidurans]
Length = 979
Score = 35.8 bits (81), Expect = 0.49
Identities = 29/99 (29%), Positives = 48/99 (48%)
Frame = -1
Query: 564 QDSPVPAENKADDYEASVVARFHILKSRAEDSSSVSSQEKLSDGVGFSGQRMYDSSISEN 385
QD+ VPA D+ + S R K++A+ + V+SQ KL + + R+ D + +N
Sbjct: 380 QDTTVPAAGPRDELKLSKADRGAQGKAQAQAEADVASQRKLKE----AESRVAD--LEKN 433
Query: 384 ASEGKRMNVDLNSSYAARGQVNLERVSCGPGGQ**SSAP 268
S+ +R+ N+ A Q N + P G+ SAP
Sbjct: 434 ISDMQRLMELKNAEIAKLNQANQAAKAPAPAGKAAESAP 472
>ref|XP_231276.1| similar to 5-AMP-activated protein kinase, gamma-2 subunit (AMPK
gamma-2 chain) (AMPK gamma2) (H91620p) [Rattus
norvegicus]
Length = 628
Score = 35.8 bits (81), Expect = 0.49
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 239 PSNK*EPEARGAELHHCPPGPHETRSRLTCPRAA*ELLRSTFILLPSEAFSEMDESYILW 418
P ++ P AR CPP P+ C RA+ E LR ++ SEAFSE S +L
Sbjct: 218 PRSRERPPARSKGRPFCPPHPNSRE----CQRASGETLRGFREIIRSEAFSENPWSVLL- 272
Query: 419 PENPTPSDNFSC-EDTELESSARDLR 493
T N+S D LE S LR
Sbjct: 273 ---VTRQSNWSAVSDQFLEVSVARLR 295
>ref|NP_189200.1| hypothetical protein; protein id: At3g25720.1 [Arabidopsis
thaliana]
Length = 282
Score = 31.6 bits (70), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = -3
Query: 331 WTSQSRTSFMWTWRTMMKFSPASFRFL 251
WTSQ S W W+ +++ P + RFL
Sbjct: 76 WTSQELVSDSWNWKCLLRLRPLAERFL 102
>dbj|BAA97453.1| streptococcal hemagglutinin [Streptococcus gordonii]
Length = 2178
Score = 31.6 bits (70), Expect = 9.3
Identities = 27/101 (26%), Positives = 40/101 (38%)
Frame = -1
Query: 636 SDSAGKLSPEGGDNPNQVHCGTFCQDSPVPAENKADDYEASVVARFHILKSRAEDSSSVS 457
S SA + E V T S + +++ ASV A A SSSVS
Sbjct: 1066 STSASVSASESASTSASVSASTSASTSASVSASESSSTSASVSA-----SESASTSSSVS 1120
Query: 456 SQEKLSDGVGFSGQRMYDSSISENASEGKRMNVDLNSSYAA 334
+ E S S +S S +ASE + +++S +A
Sbjct: 1121 ASESASTSASVSASESASTSASVSASESASTSASVSASESA 1161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,934,110
Number of Sequences: 1393205
Number of extensions: 11759598
Number of successful extensions: 47767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 46330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47596
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
