Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000001A_C03 KMC000001A_c03
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188302.2| phospholipase D zeta1 (5' fragment); protein id... 70 3e-11
dbj|BAB92819.1| putative phospholipase D-like protein [Oryza sat... 65 6e-10
ref|NP_187214.1| phospholipase D family; protein id: At3g05630.1... 53 4e-06
gb|AAO21120.1| phospholipase D2 [Homo sapiens] 39 0.063
dbj|BAA19882.1| phospholipase D [Rattus norvegicus] 38 0.11
>ref|NP_188302.2| phospholipase D zeta1 (5' fragment); protein id: At3g16785.1
[Arabidopsis thaliana] gi|20139230|sp|Q9LRZ5|PDP1_ARATH
Phospholipase D p1 (AtPLDp1) (Phospholipase D1 PHOX and
PX containing domain) (Phospholipase D zeta 1) (PLDzeta1)
gi|15723315|gb|AAL06337.1|AF411833_1 phospholipase D
zeta1 [Arabidopsis thaliana]
Length = 1096
Score = 70.1 bits (170), Expect = 3e-11
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = -3
Query: 663 DPVDRLKHVKGHLVSFPLEFMRDEDLRPAVIESEFYVSPQVYH 535
DP+DRLK +KGHLVSFPL+FM EDLRP ESE+Y SPQV+H
Sbjct: 1054 DPMDRLKAIKGHLVSFPLDFMCKEDLRPVFNESEYYASPQVFH 1096
>dbj|BAB92819.1| putative phospholipase D-like protein [Oryza sativa (japonica
cultivar-group)] gi|21328113|dbj|BAC00694.1| putative
phospholipase D-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1115
Score = 65.5 bits (158), Expect = 6e-10
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -3
Query: 663 DPVDRLKHVKGHLVSFPLEFMRDEDLRPAVIESEFYVSPQVYH 535
DP+++L+ V+GHLVSFPLEFM EDLRP ESE+Y SPQV+H
Sbjct: 1073 DPMEKLQAVRGHLVSFPLEFMCQEDLRPFFGESEYYTSPQVFH 1115
>ref|NP_187214.1| phospholipase D family; protein id: At3g05630.1 [Arabidopsis
thaliana] gi|20139231|sp|Q9M9W8|PDP2_ARATH Phospholipase
D p2 (AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2)
gi|6714447|gb|AAF26134.1|AC011620_10 putative
phospholipase D [Arabidopsis thaliana]
Length = 1039
Score = 52.8 bits (125), Expect = 4e-06
Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -3
Query: 663 DPVDRLKHVKGHLVSFPLEFMRD-EDLRPAVIESEFYVSPQVYH 535
D + LK +G+LV FPL+FM D EDLRP ESEFY +PQV+H
Sbjct: 996 DSWEILKETRGNLVCFPLQFMCDQEDLRPGFNESEFYTAPQVFH 1039
>gb|AAO21120.1| phospholipase D2 [Homo sapiens]
Length = 630
Score = 38.9 bits (89), Expect = 0.063
Identities = 17/37 (45%), Positives = 24/37 (63%)
Frame = -3
Query: 648 LKHVKGHLVSFPLEFMRDEDLRPAVIESEFYVSPQVY 538
L V+GHLV FPL+F+ DE L P + E + P+V+
Sbjct: 593 LTQVQGHLVHFPLKFLEDESLLPPLGSKEGMIPPEVW 629
>dbj|BAA19882.1| phospholipase D [Rattus norvegicus]
Length = 933
Score = 38.1 bits (87), Expect = 0.11
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -3
Query: 648 LKHVKGHLVSFPLEFMRDEDLRPAVIESEFYVSPQVY 538
L H++GHLV FPL+F+ DE L P + E + +V+
Sbjct: 896 LAHIRGHLVHFPLKFLEDESLLPPLGSKEGMIPLEVW 932
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,249,782
Number of Sequences: 1393205
Number of extensions: 11055336
Number of successful extensions: 29571
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29557
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
