KCC008754A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC008754A_C01 KCC008754A_c01
tggacaatggcccgccgcgccgggtggacgacccagccaacatgcccttcattgagagca
tctcaaagggtgagtgcccgGCGGAGCTGGACCCTGGCCGGCCGGGTGCGCCGGTGACTG
TGAACCTCATGCGCAAGGAGGAGCCGTACTCGGAGCCGGAGCGGCCCAAGCAATACTTCA
CCGGCACAGGCCGCACGCTGGGTGCGCCCACCTCCACCTCCGCCGGCGCCTCCACCTCCG
CCGGCGCCTCCACCTCCGCCGCCTCCGCCGCCGCCGCGGCCGCCGCCGACGCCTCCGCCG
GGGAGTGGCAGGGCGTGGACGAGGCACTGCCGTCCACCAGCCTGCAGCTGCGCCTGCCCG
ACGGCAGCCGCATGGTGGCGCGATTCAACCAGTGCCGACACACGGTCCGCGACATCCGGC
GCTTCGTGCGCGCGTCGTGGCCCGACCTGTCGACTGCCTACCAGCTGATGACGTGCTTCC
CCAAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC008754A_C01 KCC008754A_c01
         (485 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE04821.1| OSJNBb0048E02.1 [Oryza sativa (japonica cultivar...   132  2e-30
emb|CAE04359.1| OSJNBa0060P14.10 [Oryza sativa (japonica cultiva...   132  2e-30
ref|NP_567262.1| membrane trafficking factor -related [Arabidops...   131  5e-30
pir||F71418 hypothetical protein - Arabidopsis thaliana gi|22448...   130  1e-29
gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana]            130  1e-29

>emb|CAE04821.1| OSJNBb0048E02.1 [Oryza sativa (japonica cultivar-group)]
          Length = 228

 Score =  132 bits (332), Expect = 2e-30
 Identities = 76/160 (47%), Positives = 92/160 (57%)
 Frame = +3

Query: 3   DNGPPRRVDDPANMPFIESISKGECPAELDPGRPGAPVTVNLMRKEEPYSEPERPKQYFT 182
           D+GP R  DDPAN  FIESI K +CP EL+P     PV VN++++ E Y  P RP   F 
Sbjct: 57  DDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQ 116

Query: 183 GTGRTLGAPTSTSAGASTSAGASTSAASAAAAAAADASAGEWQGVDEALPSTSLQLRLPD 362
           G GRTLG             G+S   + A A A  +        VD++LP TS+QLRL D
Sbjct: 117 GVGRTLG------------GGSSAEESQAPAPATQEPRRSVGIVVDDSLPFTSIQLRLAD 164

Query: 363 GSRMVARFNQCRHTVRDIRRFVRASWPDLSTAYQLMTCFP 482
           G+RMVARFN   HTV DIR F+ AS P  +  YQL T FP
Sbjct: 165 GTRMVARFNM-HHTVGDIRSFIDASRPGATRPYQLQTGFP 203

>emb|CAE04359.1| OSJNBa0060P14.10 [Oryza sativa (japonica cultivar-group)]
          Length = 341

 Score =  132 bits (332), Expect = 2e-30
 Identities = 76/160 (47%), Positives = 92/160 (57%)
 Frame = +3

Query: 3   DNGPPRRVDDPANMPFIESISKGECPAELDPGRPGAPVTVNLMRKEEPYSEPERPKQYFT 182
           D+GP R  DDPAN  FIESI K +CP EL+P     PV VN++++ E Y  P RP   F 
Sbjct: 170 DDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQ 229

Query: 183 GTGRTLGAPTSTSAGASTSAGASTSAASAAAAAAADASAGEWQGVDEALPSTSLQLRLPD 362
           G GRTLG             G+S   + A A A  +        VD++LP TS+QLRL D
Sbjct: 230 GVGRTLG------------GGSSAEESQAPAPATQEPRRSVGIVVDDSLPFTSIQLRLAD 277

Query: 363 GSRMVARFNQCRHTVRDIRRFVRASWPDLSTAYQLMTCFP 482
           G+RMVARFN   HTV DIR F+ AS P  +  YQL T FP
Sbjct: 278 GTRMVARFNM-HHTVGDIRSFIDASRPGATRPYQLQTGFP 316

>ref|NP_567262.1| membrane trafficking factor -related [Arabidopsis thaliana]
           gi|20268692|gb|AAM14050.1| putative membrane trafficking
           factor [Arabidopsis thaliana] gi|21553471|gb|AAM62564.1|
           putative membrane trafficking factor [Arabidopsis
           thaliana] gi|21689865|gb|AAM67493.1| putative membrane
           trafficking factor [Arabidopsis thaliana]
          Length = 303

 Score =  131 bits (329), Expect = 5e-30
 Identities = 74/159 (46%), Positives = 99/159 (61%), Gaps = 2/159 (1%)
 Frame = +3

Query: 3   DNGPPRRVDDPANMPFIESISKGECPAELDPGRPGAPVTVNLMRKEEPYSEPERPKQYFT 182
           D+GP R++DDP N  F+ESI K ECP EL+P    APV VNLMRKEE   E ++ +  F 
Sbjct: 124 DDGPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLMRKEEKCPERQKRRVSFQ 183

Query: 183 GTGRTLGAPTSTSAGASTSAGASTSAA--SAAAAAAADASAGEWQGVDEALPSTSLQLRL 356
           G GRTLG       G++  +G+S+  A  SA      + +  +   +DE +P+TS+QLRL
Sbjct: 184 GVGRTLG-------GSNEGSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETVPTTSIQLRL 236

Query: 357 PDGSRMVARFNQCRHTVRDIRRFVRASWPDLSTAYQLMT 473
            DG+R+VA+FN   HTV DIR F+ +S P  S  YQL T
Sbjct: 237 ADGTRLVAKFNH-HHTVNDIRGFIDSSRPGASLNYQLQT 274

>pir||F71418 hypothetical protein - Arabidopsis thaliana
           gi|2244898|emb|CAB10320.1| phosphatase like protein
           [Arabidopsis thaliana] gi|7268288|emb|CAB78583.1|
           phosphatase like protein [Arabidopsis thaliana]
          Length = 969

 Score =  130 bits (326), Expect = 1e-29
 Identities = 72/157 (45%), Positives = 97/157 (60%)
 Frame = +3

Query: 3   DNGPPRRVDDPANMPFIESISKGECPAELDPGRPGAPVTVNLMRKEEPYSEPERPKQYFT 182
           ++GP R   DP N  F+ SIS+ ECP+EL+P     PV V+L+R+ E ++EP +PK  F 
Sbjct: 246 NDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQ 305

Query: 183 GTGRTLGAPTSTSAGASTSAGASTSAASAAAAAAADASAGEWQGVDEALPSTSLQLRLPD 362
           G GRTLGA  S S+ A  ++ A  + A A +             VD A P+TS+QLRL D
Sbjct: 306 GVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLV---------VDPAAPTTSIQLRLAD 356

Query: 363 GSRMVARFNQCRHTVRDIRRFVRASWPDLSTAYQLMT 473
           G+R+V+RFN   HTVRD+R F+ AS P  S  YQL+T
Sbjct: 357 GTRLVSRFNN-HHTVRDVRGFIDASRPGGSKEYQLLT 392

>gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana]
          Length = 421

 Score =  130 bits (326), Expect = 1e-29
 Identities = 72/157 (45%), Positives = 97/157 (60%)
 Frame = +3

Query: 3   DNGPPRRVDDPANMPFIESISKGECPAELDPGRPGAPVTVNLMRKEEPYSEPERPKQYFT 182
           ++GP R   DP N  F+ SIS+ ECP+EL+P     PV V+L+R+ E ++EP +PK  F 
Sbjct: 246 NDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQ 305

Query: 183 GTGRTLGAPTSTSAGASTSAGASTSAASAAAAAAADASAGEWQGVDEALPSTSLQLRLPD 362
           G GRTLGA  S S+ A  ++ A  + A A +             VD A P+TS+QLRL D
Sbjct: 306 GVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLV---------VDPAAPTTSIQLRLAD 356

Query: 363 GSRMVARFNQCRHTVRDIRRFVRASWPDLSTAYQLMT 473
           G+R+V+RFN   HTVRD+R F+ AS P  S  YQL+T
Sbjct: 357 GTRLVSRFNN-HHTVRDVRGFIDASRPGGSKEYQLLT 392



EST assemble image


clone accession position
1 MX205h04_r BP089365 1 337
2 MX257h07_r BP092699 168 485




Chlamydomonas reinhardtii
Kazusa DNA Research Institute