KCC007166A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC007166A_C01 KCC007166A_c01
TACTGTGGCATTACCGGTATAGTATTGTAGCAGAATAACCATAATTTGATGCCCTACGAC
GCGGAACTCGCAAGGTGGTGTCTTGTTTTGCCTGATGGGGTAAGCTGCGGGCACACAATA
CACACACGGTAAATACCCAACATTGAGCCAGCGCCGCTCGGCGTTTGCCTTGAAGTCGTT
TGGTTTACAGTCTGAGCTTTACAGTGTTAACACAGCGACCCATAACCATGCAGTCCCTCC
ACGCGCGCTCGACGCGCACCTGTATCGCAACCCAGAACGCTGCCACGCGCCGAGCTGTCG
TCGTTCAAGCATCTAAGGGCTTTGGAGCAGCGCAACCAAAGAAATTTTGTGCAGTGCAAG
GACGCTGCGACGCCCGACCCTTGCCCATGCGAGAGCGGGAAGGCCTACAAGAACTGCTGC
GGGCCATACCACCGCAGCGAGGCGCTGGCCCCCACCCCTGAGGCCACGCTGCGTGCCCGC
TTCGCCGCGTTCAACAAGGCTGAGCCTGACTACATCCTCAACACCACCCACCCCGACTAC
CACATACACCAGTACAACGTGCCCACCCCCGGCGGCGCGCAGGACCGTCTTCGCGAGGAC
GTGGCGACTGGCTGCAACCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC007166A_C01 KCC007166A_c01
         (620 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9RX32|Y483_DEIRA Hypothetical UPF0225 protein DR0483               73  4e-12
ref|NP_294206.1| conserved hypothetical protein [Deinococcus rad...    73  4e-12
ref|ZP_00051893.1| COG3012: Uncharacterized protein conserved in...    64  1e-09
ref|NP_625952.1| conserved hypothetical protein [Streptomyces co...    63  4e-09
ref|NP_896595.1| conserved hypothetical protein [Synechococcus s...    62  7e-09

>sp|Q9RX32|Y483_DEIRA Hypothetical UPF0225 protein DR0483
          Length = 130

 Score = 72.8 bits (177), Expect = 4e-12
 Identities = 29/53 (54%), Positives = 38/53 (70%)
 Frame = +1

Query: 379 PCPCESGKAYKNCCGPYHRSEALAPTPEATLRARFAAFNKAEPDYILNTTHPD 537
           PCPC SG++Y  CC P+H  E  APTPEA +R+R+AA+  A+ DY+  T HPD
Sbjct: 15  PCPCGSGRSYAACCQPFHTGERDAPTPEALMRSRYAAYALADADYVRRTWHPD 67

>ref|NP_294206.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471624|pir||F75514 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6458170|gb|AAF10062.1|AE001907_8 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 153

 Score = 72.8 bits (177), Expect = 4e-12
 Identities = 29/53 (54%), Positives = 38/53 (70%)
 Frame = +1

Query: 379 PCPCESGKAYKNCCGPYHRSEALAPTPEATLRARFAAFNKAEPDYILNTTHPD 537
           PCPC SG++Y  CC P+H  E  APTPEA +R+R+AA+  A+ DY+  T HPD
Sbjct: 38  PCPCGSGRSYAACCQPFHTGERDAPTPEALMRSRYAAYALADADYVRRTWHPD 90

>ref|ZP_00051893.1| COG3012: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum]
          Length = 163

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 27/52 (51%), Positives = 37/52 (70%)
 Frame = +1

Query: 382 CPCESGKAYKNCCGPYHRSEALAPTPEATLRARFAAFNKAEPDYILNTTHPD 537
           CPC SG+ Y +CC P+   +A+APTPEA +R+R+AAF  A  DY+ +T  PD
Sbjct: 4   CPCGSGQPYDSCCEPFISGKAVAPTPEALMRSRYAAFTVAAIDYLHDTLAPD 55

 Score = 36.6 bits (83), Expect = 0.30
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 364 AATPDPCPCESGKAYKNCCG 423
           A   DPCPC SGK +K CCG
Sbjct: 143 AGRNDPCPCGSGKKFKKCCG 162

>ref|NP_625952.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
           gi|27734630|sp|Q9AD90|YG77_STRCO Hypothetical UPF0225
           protein SCO1677 gi|13620203|emb|CAC36380.1| conserved
           hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 124

 Score = 62.8 bits (151), Expect = 4e-09
 Identities = 24/52 (46%), Positives = 34/52 (65%)
 Frame = +1

Query: 379 PCPCESGKAYKNCCGPYHRSEALAPTPEATLRARFAAFNKAEPDYILNTTHP 534
           PCPC   ++Y+ CCG +H   A APT EA +R+R+ AF + +  Y+L T HP
Sbjct: 5   PCPCGRSESYEKCCGRFHGGTAAAPTAEALMRSRYCAFVQGDASYLLRTWHP 56

>ref|NP_896595.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
           gi|33638720|emb|CAE07015.1| conserved hypothetical
           protein [Synechococcus sp. WH 8102]
          Length = 135

 Score = 62.0 bits (149), Expect = 7e-09
 Identities = 27/52 (51%), Positives = 33/52 (62%)
 Frame = +1

Query: 379 PCPCESGKAYKNCCGPYHRSEALAPTPEATLRARFAAFNKAEPDYILNTTHP 534
           PCPC  G+ Y  CCGP HR E  A T E  +R+R++AF K E DY+L T  P
Sbjct: 11  PCPCGGGE-YSRCCGPLHRQERRAETAEQLMRSRYSAFAKGEVDYLLQTHEP 61



EST assemble image


clone accession position
1 MXL026a10_r BP094633 1 259
2 MX249e11_r BP092085 61 416
3 LC085h07_r AV625023 210 620




Chlamydomonas reinhardtii
Kazusa DNA Research Institute