KCC006959A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC006959A_C01 KCC006959A_c01
cTTGAGCAACGTACTTTACCAGCTGCCATTAGCATAGACCCGACCTGTGACAATGAGCTT
CGGAGGTCTGCCCGGTGCGCCTGGAGGCAAGATGGATGATCATGCGATTATGGATCAGGT
CAAGTCACAACTGCAAAGGCAGATGGTTCAGGAGTTCTACCAGACTGTGCGCGACAAGTG
CTTCAAGGCGTGCCTCAGCAACCCAGGCAGTAGCCTCAGCAGCAACGATCAAAAGTGCCT
CAACCGGTGCATGGACCGGTACCAGGACGCAACAAACGTTATCACAAAGGTGGTCCTCAA
CCAGTAAAGCGGGGCATCAAAAGCTGGCGGGATCATGCAGGCGTCGTACCCGTCACCGTG
GATCAGCGGTCGTGCGGAGCTTGCAGCTGGTGGTTGCAGCCATAACATGTAGCAGCTGCA
ACGGCGGAAGGCGACACAGGGGCGCTGCGCTCATGCTTGCTCGTCGGTGAGCAGCACGGA
CAGCACGGAGGGCTTGTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC006959A_C01 KCC006959A_c01
         (499 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_038923.1| translocase of inner mitochondrial membrane 9 h...    81  6e-15
dbj|BAB22536.1| unnamed protein product [Mus musculus]                 81  6e-15
gb|AAH42226.1| Similar to sirtuin silent mating type information...    80  1e-14
gb|AAH11436.1| Timm9 protein [Mus musculus]                            79  3e-14
sp|Q9XGY5|IM13_ORYSA Mitochondrial import inner membrane translo...    79  4e-14

>ref|NP_038923.1| translocase of inner mitochondrial membrane 9 homolog [Mus
           musculus] gi|21955146|ref|NP_665724.1| sirtuin silent
           mating type information regulation 2 homolog 6 [Rattus
           norvegicus] gi|12230169|sp|Q9UHL8|I13A_HUMAN
           Mitochondrial import inner membrane translocase subunit
           TIM13 A gi|5107078|gb|AAD39952.1|AF144701_1 small zinc
           finger-like protein [Rattus norvegicus]
           gi|5107080|gb|AAD39953.1|AF144702_1 small zinc
           finger-like protein [Mus musculus]
           gi|6524629|gb|AAF15101.1| TIMM13a [Homo sapiens]
           gi|12843594|dbj|BAB26042.1| unnamed protein product [Mus
           musculus] gi|12843772|dbj|BAB26109.1| unnamed protein
           product [Mus musculus] gi|12850462|dbj|BAB28728.1|
           unnamed protein product [Mus musculus]
           gi|26354114|dbj|BAC40687.1| unnamed protein product [Mus
           musculus]
          Length = 95

 Score = 81.3 bits (199), Expect = 6e-15
 Identities = 35/72 (48%), Positives = 48/72 (66%)
 Frame = +2

Query: 74  GAPGGKMDDHAIMDQVKSQLQRQMVQEFYQTVRDKCFKACLSNPGSSLSSNDQKCLNRCM 253
           G  GGK+D  AIM+QVK Q+     QE  Q + DKCF+ C+  PG SL +++QKC+  CM
Sbjct: 11  GTGGGKLDPGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM 70

Query: 254 DRYQDATNVITK 289
           DRY DA N +++
Sbjct: 71  DRYMDAWNTVSR 82

>dbj|BAB22536.1| unnamed protein product [Mus musculus]
          Length = 95

 Score = 81.3 bits (199), Expect = 6e-15
 Identities = 35/72 (48%), Positives = 48/72 (66%)
 Frame = +2

Query: 74  GAPGGKMDDHAIMDQVKSQLQRQMVQEFYQTVRDKCFKACLSNPGSSLSSNDQKCLNRCM 253
           G  GGK+D  AIM+QVK Q+     QE  Q + DKCF+ C+  PG SL +++QKC+  CM
Sbjct: 11  GTGGGKLDPGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM 70

Query: 254 DRYQDATNVITK 289
           DRY DA N +++
Sbjct: 71  DRYMDAWNTVSR 82

>gb|AAH42226.1| Similar to sirtuin silent mating type information regulation 2
           homolog 6 (S. cerevisiae) [Xenopus laevis]
          Length = 96

 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 34/72 (47%), Positives = 49/72 (67%)
 Frame = +2

Query: 74  GAPGGKMDDHAIMDQVKSQLQRQMVQEFYQTVRDKCFKACLSNPGSSLSSNDQKCLNRCM 253
           G+  GK+D  AIM+QVK Q+     QE  Q + DKCF+ C+  PG SL +++QKC+  CM
Sbjct: 12  GSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCVAMCM 71

Query: 254 DRYQDATNVITK 289
           DRY DA N++++
Sbjct: 72  DRYMDAWNIVSR 83

>gb|AAH11436.1| Timm9 protein [Mus musculus]
          Length = 95

 Score = 79.0 bits (193), Expect = 3e-14
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +2

Query: 74  GAPGGKMDDHAIMDQVKSQLQRQMVQEFYQTVRDKCFKACLSNPGSSLSSNDQKCLNRCM 253
           G  GGK+   AIM+QVK Q+     QE  Q + DKCF+ C+  PG SL +++QKC+  CM
Sbjct: 11  GTGGGKLSPGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM 70

Query: 254 DRYQDATNVITK 289
           DRY DA N +++
Sbjct: 71  DRYMDAWNTVSR 82

>sp|Q9XGY5|IM13_ORYSA Mitochondrial import inner membrane translocase subunit Tim13
           gi|5107149|gb|AAD39987.1|AF150080_1 small zinc
           finger-like protein [Oryza sativa]
          Length = 84

 Score = 78.6 bits (192), Expect = 4e-14
 Identities = 34/78 (43%), Positives = 54/78 (68%)
 Frame = +2

Query: 56  SFGGLPGAPGGKMDDHAIMDQVKSQLQRQMVQEFYQTVRDKCFKACLSNPGSSLSSNDQK 235
           SF    G+P    +  A+MDQ+K+QL +   QEF +TV +KCF  C++ PGSSLS ++  
Sbjct: 3   SFSSSSGSPP---NTEALMDQIKAQLAQAYAQEFLETVGNKCFAXCVTKPGSSLSGSESS 59

Query: 236 CLNRCMDRYQDATNVITK 289
           C++RC+DRY +AT ++++
Sbjct: 60  CISRCVDRYIEATGIVSR 77



EST assemble image


clone accession position
1 LC064b03_r AV623461 0 498
2 MX251a05_r BP092202 1 476




Chlamydomonas reinhardtii
Kazusa DNA Research Institute