KCC006498A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC006498A_C01 KCC006498A_c01
ctcctccggtaattacatgtcgcaccacagcacggcaatgcaagcgtcatggctgcggcc
ttgacgctgacaatgccagcGTCTGATATCCCGTCAACTCTGTGTCGTGTCTGTAGATGT
ACCGCAATCACCGGCTCCGCCATCAGCTACACCACCCGCCTTTACAGTACAGTATGAATG
CTGTCCCACGTCGGCGTCATGTGACGTAAGCGTCTTCCGTGTCACTCTCTCCTGGCACGC
GTTGTCATAATACGGTACATTGCAGCCTTACTGCGGTAAGCACTTTGCAAGTACAGTCAT
AGAATTTATCAAATCGCAAATCCAAACTGCAATCATTAGGATGCGGCAAGCGCGTGCGGA
CGTCCACGCAGCTCGCCTTTTAGGAGTGTGACAGCACGTGCACCGCAAACCACAAACGCC
TGACACGCACATCCACTTCAGCCAAGAATAAACCAACTTACCACATCTTTATTTACTTGT
GAGGTTGCGGTCCTATTTAcagcgattatttgcactttatcttaaccggcacgcgagcaa
cgctgcgttattgagtgattgaggtgtgttacccaaaac


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC006498A_C01 KCC006498A_c01
         (579 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_628830.1| putative serine protease precursor [Streptomyce...    34  1.7
dbj|BAB90684.1| B1156H12.19 [Oryza sativa (japonica cultivar-gro...    33  2.2
emb|CAA56753.1| unnamed protein product [Streptomyces ghanaensis]      33  2.9
emb|CAD42809.1| serine protease [Streptomyces lividans]                33  3.7
ref|XP_232671.2| similar to Probable chromodomain-helicase-DNA-b...    32  4.9

>ref|NP_628830.1| putative serine protease precursor [Streptomyces coelicolor A3(2)]
           gi|7288066|emb|CAB81861.1| putative serine protease
           precursor [Streptomyces coelicolor A3(2)]
          Length = 463

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 24/89 (26%), Positives = 34/89 (37%)
 Frame = -1

Query: 372 AAWTSARACRILMIAVWICDLINSMTVLAKCLPQ*GCNVPYYDNACQERVTRKTLTSHDA 193
           A+   A  CR      W C  +  +            +V Y +      VTR T+ +   
Sbjct: 301 ASPVGASVCRSGSTTGWHCGTVTQLNT----------SVTYQEGTISP-VTRTTVCAEPG 349

Query: 192 DVGQHSYCTVKAGGVADGGAGDCGTSTDT 106
           D G       +A GV  GG+GDC T  +T
Sbjct: 350 DSGGSFISGSQAQGVTSGGSGDCRTGGET 378

>dbj|BAB90684.1| B1156H12.19 [Oryza sativa (japonica cultivar-group)]
           gi|20521463|dbj|BAB91971.1| OSJNBa0024F24.7 [Oryza
           sativa (japonica cultivar-group)]
          Length = 278

 Score = 33.5 bits (75), Expect = 2.2
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
 Frame = +2

Query: 92  RQLCVVSVDVPQSPAPPSATPPAFTVQYECCPT-SASCDVSVFRVTLSWHALS*YGTLQ- 265
           R  C ++   P+S A P +TPP   V Y    T S  C         SW A + Y T + 
Sbjct: 37  RAHCFMNPSTPRSLASPVSTPPTMHVVYRIYSTGSWKC---------SWKAYNPYVTYKH 87

Query: 266 PYCGKHFASTVIEFIKSQIQTAIIRMRQARADVHAARLLGV*QHVHRKPQTPDTHI 433
           PY G      V  F+K +I   +          H  R  GV +   R PQ P  H+
Sbjct: 88  PYAGH-----VNLFLKQRISWIL----DEHMLNHQGRPWGVSRAQARGPQNPGAHM 134

>emb|CAA56753.1| unnamed protein product [Streptomyces ghanaensis]
          Length = 80

 Score = 33.1 bits (74), Expect = 2.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 424 HAHPLQPRINQLTTSLFTCEVAVLFTAIICTLS*PAREQRCVIE*LRCVTQ 576
           H  PL P I+ L   LF   +AVL  A++C  +    ++R V+  +R + +
Sbjct: 16  HGRPLMPTIDTLLIPLFVVALAVLCAALVCVTAIVRADRRDVVAVVRALPE 66

>emb|CAD42809.1| serine protease [Streptomyces lividans]
          Length = 458

 Score = 32.7 bits (73), Expect = 3.7
 Identities = 24/89 (26%), Positives = 33/89 (36%)
 Frame = -1

Query: 372 AAWTSARACRILMIAVWICDLINSMTVLAKCLPQ*GCNVPYYDNACQERVTRKTLTSHDA 193
           A+   A  CR      W C  +  +            +V Y +      VTR T+ +   
Sbjct: 301 ASPVGASVCRSGSTTGWHCGTVTQLNT----------SVTYQEGTISP-VTRTTVCAEPG 349

Query: 192 DVGQHSYCTVKAGGVADGGAGDCGTSTDT 106
           D G       +A GV  GG+GDC T   T
Sbjct: 350 DSGGSFISGSQAQGVTSGGSGDCRTGGGT 378

>ref|XP_232671.2| similar to Probable chromodomain-helicase-DNA-binding protein
            KIAA1416 [Rattus norvegicus]
          Length = 2974

 Score = 32.3 bits (72), Expect = 4.9
 Identities = 15/42 (35%), Positives = 24/42 (56%)
 Frame = -1

Query: 315  DLINSMTVLAKCLPQ*GCNVPYYDNACQERVTRKTLTSHDAD 190
            +L+N+M  L KC     CN PY  N  +E++  +   +H+AD
Sbjct: 1229 NLLNTMMELRKC-----CNHPYLINGAEEKILEEFKDAHNAD 1265



EST assemble image


clone accession position
1 LC009f08_r AV619535 1 469
2 MX229c11_r BP090802 279 579




Chlamydomonas reinhardtii
Kazusa DNA Research Institute