KCC005919A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005919A_C01 KCC005919A_c01
aactacgtactacttttatccgttctttCTTGGACACGCGTGACGCGGTGCTAGAACTAG
AAGTTAGCCCAGTTACTTGAAGCTAGCCCCCCATACGCCAGAGATTGTTGTGCTTTTATA
TTTGCTTGATCCTTCTAAAGCAGTCAGCGACCACCAGCTGACAGTAAAGGTCCACGGACA
TCAAGCTCGCCCGCGCTCCTGCCCAGCGCGGTGTGCTAGACCTAGACTGCTCGTTTGTTA
GGCATTCAGCTTCAGCAACCACGGGAAAGCAGGGCAAGCAAATGACGGTCGGGCCCACTC
CGAGCCCGAAGGGCGTTGCGCCTCAGCCGAAGGTGCTCCTTCTGGATTTAGATGACACTT
TGTATCGGAACCACGAGGTCCCAACAATTGTGAAGGAGCGCATCCAGGCCTACATGGTCC
AGAAACTTGGGATTCCGGCTGATGAAGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005919A_C01 KCC005919A_c01
         (449 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM67205.1| putative ripening-related protein-like [Arabidops...    40  0.009
ref|NP_851223.1| haloacid dehalogenase-like hydrolase family [Ar...    40  0.009
ref|NP_200756.2| haloacid dehalogenase-like hydrolase family [Ar...    40  0.009
ref|ZP_00039886.1| COG0151: Phosphoribosylamine-glycine ligase [...    37  0.080
ref|NP_900438.1| probable outer membrane multidrug resistance li...    36  0.14

>gb|AAM67205.1| putative ripening-related protein-like [Arabidopsis thaliana]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 22/39 (56%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
 Frame = +3

Query: 336 LLLDLDDTLYR-NHEVPTIVKERIQAYMVQKLGIPADEV 449
           LL D+DDTLY  +  +   VK+ IQ YMVQKLGI  D+V
Sbjct: 18  LLFDIDDTLYPLSSGLAMEVKKNIQEYMVQKLGIEEDKV 56

>ref|NP_851223.1| haloacid dehalogenase-like hydrolase family [Arabidopsis thaliana]
           gi|8885553|dbj|BAA97483.1| ripening-related
           protein-like; hydrolase-like [Arabidopsis thaliana]
           gi|17979377|gb|AAL49914.1| putative ripening-related
           protein [Arabidopsis thaliana]
           gi|20465781|gb|AAM20379.1| putative ripening protein
           [Arabidopsis thaliana]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 22/39 (56%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
 Frame = +3

Query: 336 LLLDLDDTLYR-NHEVPTIVKERIQAYMVQKLGIPADEV 449
           LL D+DDTLY  +  +   VK+ IQ YMVQKLGI  D+V
Sbjct: 18  LLFDIDDTLYPLSSGLAMEVKKNIQEYMVQKLGIEEDKV 56

>ref|NP_200756.2| haloacid dehalogenase-like hydrolase family [Arabidopsis thaliana]
          Length = 281

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 22/39 (56%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
 Frame = +3

Query: 336 LLLDLDDTLYR-NHEVPTIVKERIQAYMVQKLGIPADEV 449
           LL D+DDTLY  +  +   VK+ IQ YMVQKLGI  D+V
Sbjct: 18  LLFDIDDTLYPLSSGLAMEVKKNIQEYMVQKLGIEEDKV 56

>ref|ZP_00039886.1| COG0151: Phosphoribosylamine-glycine ligase [Xylella fastidiosa
           Dixon]
          Length = 430

 Score = 36.6 bits (83), Expect = 0.080
 Identities = 20/42 (47%), Positives = 27/42 (63%), Gaps = 1/42 (2%)
 Frame = -1

Query: 185 LDVRGPLLSAGGR*LL*KDQ-ANIKAQQSLAYGGLASSNWAN 63
           LDV G +++AGGR L      +N+   Q  AYGG+AS +WAN
Sbjct: 370 LDVAGRVITAGGRVLCVTSLGSNVSEAQRHAYGGVASLHWAN 411

>ref|NP_900438.1| probable outer membrane multidrug resistance lipoprotein
           [Chromobacterium violaceum ATCC 12472]
           gi|34102077|gb|AAQ58444.1| probable outer membrane
           multidrug resistance lipoprotein [Chromobacterium
           violaceum ATCC 12472]
          Length = 476

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 168 RSTDIKLARAPAQRGVLDLDCSFVRHSASATTGKQGKQMTVGPTPSPKGVAPQPKVLLLD 347
           R  ++ + R   Q+  LD D +  RH+ +A TG QG Q      P     APQP +  LD
Sbjct: 226 RGNEVSIERLQQQQSALDNDIARSRHALAALTG-QGPQQQDSLNPGKLDAAPQPALDKLD 284



EST assemble image


clone accession position
1 MX255h07_r BP092556 1 450
2 HCL048f12_r AV642268 29 181
3 MX228c02_r BP090730 76 371




Chlamydomonas reinhardtii
Kazusa DNA Research Institute