KCC005904A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005904A_C01 KCC005904A_c01
attagTAAACCTTTTGCTGGGACTACAGGTGCAAAACTGTTAGCATCCATCTACAGTTTC
GAGCAAGAGCTCGTTAGTGAACCTATTGCTCATACACATAAATATGATGCGCTTCGAAGC
TAGCATATCGCAGCACCGTTACTGTCGAGGCTTTCTGATCGGCGGGCTGTCCCTGGCACG
GCGCCAAGTGCACCGCGGCCACGCCTCAGCAGCGGCAGCAGCGTAACTCCGTCCTCGCCT
GCAGCAACACGGAACCTCAGCGACATGATGGGAGCCTACAGGCCCCAAAGCAGCAGCCGC
TGCTGTTGCCGCCGGCTCAGCTGCGGAAGGCGCTGTGCTGGTGCTCCGCCGGGCTGCTCG
TGCTGCTGCCTGTCGGCGCCCCTGGCACGCCAGCTGCCCACGCCGCCACAGCCGCCGCAG
CCACTGCTAGCCCCGCCTCCGGCCTGACCTCCCTTGTCTCAGGGCCCAGCAGTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005904A_C01 KCC005904A_c01
         (476 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD31829.1| NapG oxidoreductase [Streptomyces collinus]             45  6e-04
dbj|BAB90096.1| purple acid phosphatase-like protein [Oryza sati...    42  0.005
ref|NP_542614.1| hypothetical protein [Grapevine fleck virus] gi...    41  0.006
ref|NP_176199.1| formin homology 2 (FH2) domain-containing prote...    41  0.006
ref|NP_334701.1| hypothetical protein [Mycobacterium tuberculosi...    41  0.006

>gb|AAD31829.1| NapG oxidoreductase [Streptomyces collinus]
          Length = 341

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
 Frame = +1

Query: 184 PSAPRPRL---SSGSSVTPSSPAATRNLSDMMGAYRPQSSSRCC--CRRLSC---GRRCA 339
           P + RPR    S+ S  T S+PA+   L    GA  P  S+      RR +C   G R A
Sbjct: 182 PCSARPRSTRPSAPSRTTSSTPASGPRLPAPRGAASPSPSAPVGPRTRRRTCPWSGSRAA 241

Query: 340 GAPPGCSCCCLSAPLARQLPTPPQPPQ--PLLAPPPA*P 450
            APP C+    SAP     P+ P P +  P   P PA P
Sbjct: 242 PAPPNCAAPSASAPTGSPSPSSPSPGRAPPAGCPSPAEP 280

>dbj|BAB90096.1| purple acid phosphatase-like protein [Oryza sativa (japonica
           cultivar-group)] gi|20804919|dbj|BAB92599.1| purple acid
           phosphatase-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 46/139 (33%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
 Frame = +1

Query: 58  FEQELVSEPI-----AHTHKYD-ALRS*HIAAPLLSRLSDRRAVPGTAPSAPRPRLSSGS 219
           FE+ LV   +     AH H Y+ + R  +I   +++R   RR  P +A S  R RL S  
Sbjct: 95  FERWLVDTKVDLVLAAHVHSYERSRRFANINYDIVNRA--RRRSPSSAGSRRRSRLLSAV 152

Query: 220 SVTPSSPAATRNLSDMMGAYRPQSSSRCCCRRLSCGRRCAGAPPGCSCCCLSAPLARQLP 399
           + TP  P+ATR       A RPQ  SR         R      P  +    + P A   P
Sbjct: 153 AATP--PSATRPR-----APRPQGRSRL--------RSAVAVTPPSAIRPRAPPSAA--P 195

Query: 400 TPPQPPQPLLAPPPA*PPL 456
             P PP     PPP  PPL
Sbjct: 196 RRPPPPAVRRPPPPCLPPL 214

>ref|NP_542614.1| hypothetical protein [Grapevine fleck virus]
           gi|18073604|emb|CAC84402.1| hypothetical protein
           [Grapevine fleck virus]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
 Frame = +1

Query: 145 SRLSDRRAVPGTAP-----------SAPRPRLSSGSSVTPSSPAATRNLSDMMGAYRPQS 291
           S L+  R  P T+P           S P  R  S +   P+SP A+  ++    +  P  
Sbjct: 73  SALNASRGAPSTSPPPSSSPPSSPASTPPSRTPSPTPTAPASPVASTAMTPASPSVPPPP 132

Query: 292 SSRCCCRRLSCGRRCAGAPPGCSCCCLSAPLARQLPTPPQPPQPLLAPPP 441
           S+       S     + APP  +     APL R  P PP P  P L PPP
Sbjct: 133 SAAP-----SSSAALSSAPPPST-----APLPRHEPRPPPPLPPPLQPPP 172

>ref|NP_176199.1| formin homology 2 (FH2) domain-containing protein [Arabidopsis
           thaliana] gi|25404245|pir||C96623 hypothetical protein
           F23H11.22 [imported] - Arabidopsis thaliana
           gi|5080823|gb|AAD39332.1|AC007258_21 Hypothetical
           protein [Arabidopsis thaliana]
           gi|34222088|gb|AAQ62880.1| At1g59910 [Arabidopsis
           thaliana]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +1

Query: 178 TAPSAPRPRLSSGSSVTPSSPAATRNLSDMMGAYRPQSSSRCCCRRLSCGR-RCAGAPPG 354
           +APS P P     ++V      +T+ +S   G Y P +++      L+ G+   A APP 
Sbjct: 316 SAPSVPLPP-GQYTAVNAPFSTSTQPVSLPPGQYMPGNAALSASTPLTPGQFTTANAPP- 373

Query: 355 CSCCCLSAPLARQLPTPPQPPQPLLAPPPA*PPLSQGPA 471
                 + P      +PP PP P  A PP  PP  +GPA
Sbjct: 374 ------APPGPANQTSPPPPPPPSAAAPPPPPPPKKGPA 406

>ref|NP_334701.1| hypothetical protein [Mycobacterium tuberculosis CDC1551]
           gi|13879785|gb|AAK44515.1| hypothetical protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 598

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
 Frame = +1

Query: 172 PGTAPSAPRPRL----SSGSSVTPSSPAATRNLSDMMGAYRPQSS-------SRCCCRRL 318
           P +AP AP P L    ++     PS+P     L+ +  + RP  +        R CC R+
Sbjct: 165 PPSAPVAPWPPLPPLPNNHPPAPPSAPVPGVPLAPLPISGRPVRAWVGSLIALRICCCRV 224

Query: 319 SCGRRCAGAPPGCSCCCLSAPLARQLPT-------PPQPPQPLLAPPPA*PPLSQGPAV 474
             G       P     C   P A  +P        PP PP P+  P P  PPL   PA+
Sbjct: 225 CSGVLAGALNPSRPSSCPPKPPAPAVPAGAPVPPLPPLPPLPISTPLPPAPPLPPLPAL 283

 Score = 34.3 bits (77), Expect = 0.76
 Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
 Frame = +1

Query: 172 PGTAPSAPRPRLSSGSSVTPSSPAATRNLSDMMGAYRPQSSSRCCCRRLSCGRRCAGAPP 351
           P T PSA  P         P +P A  N         P S        +        APP
Sbjct: 455 PPTPPSANSPPFPPAPPAPPVAPKAAANPPGPPTPAAPNS--------MPAAPPAPPAPP 506

Query: 352 GCSCCCLSAPLARQLP----TPPQPPQPLLAP----PPA*P-PLSQGPA 471
                   AP A  LP     PP PP P L P    PPA P P++Q P+
Sbjct: 507 VPVLALPPAPPAPPLPMSPPAPPLPPAPPLTPAAPDPPAPPLPINQPPS 555

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 15/40 (37%), Positives = 18/40 (44%)
 Frame = +1

Query: 349 PGCSCCCLSAPLARQLPTPPQPPQPLLAPPPA*PPLSQGP 468
           P    C  + P A  +P PP PP P   P P  PP +  P
Sbjct: 15  PNSPPCPPAPPSAPSVPAPPVPPAPKSNPFPPVPPFAPNP 54

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 31/105 (29%), Positives = 35/105 (32%), Gaps = 4/105 (3%)
 Frame = +1

Query: 166 AVPGTAPSAPRPRLSSGSSVTPSSPAATRNLSDMMGAYRPQSSSRCCCRRLSCGRRCAGA 345
           A P + PS P P      +  P SP          G   P   +     RLS       A
Sbjct: 325 APPASKPSPPTPPAPPEPNNVPPSPPIPPAPPPPSGLDPPLPPAPPAAPRLSMPAS-PPA 383

Query: 346 PPGCSCCCLSAPLARQLPTPPQPPQPLLAP----PPA*PPLSQGP 468
           PP      +  P     P PP PP P   P    PPA PP    P
Sbjct: 384 PPFPPTLIMLVP-----PLPPVPPAPNSPPEPPSPPAPPPKMPNP 423



EST assemble image


clone accession position
1 HCL047d02_r AV642202 1 484
2 MX232a12_r BP090983 6 261




Chlamydomonas reinhardtii
Kazusa DNA Research Institute