KCC005265A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005265A_C01 KCC005265A_c01
CGTATACATACGCCACCTATCCTTCGGTTTCTCATATAGTTCCTTACTCTCCGCCTAGTT
GCCTAGCATTACAAGTCCTCCTAGCTCTAGTTCTCTCCTGGCTCTCCTCCACCGGCTAAA
CGCCGAGCGCCAGAACTTCATGGCGGCAACCACACAACGTGACGACATGCCGGCCAATTC
TGACGAACTGCAGCCCCAGCTGCAGCCGCCGCGCGTGGTCAACGCCAGCCTGGCTGCTAA
CCCGGCTGGCGGCACACGGTACCATACCGCAGCTAGCAGCCCCGCGCACAGCGCCGGCAG
CGACGGCCAGGATGCAGAGGCAGATCCAGAGCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005265A_C01 KCC005265A_c01
         (334 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_563685.2| leucine rich repeat protein family [Arabidopsis...    40  0.011
pir||A86166 protein F21B7.6 [imported] - Arabidopsis thaliana gi...    40  0.011
ref|XP_328560.1| hypothetical protein [Neurospora crassa] gi|289...    35  0.21
ref|ZP_00053494.1| COG0529: Adenylylsulfate kinase and related k...    35  0.28
gb|AAO84555.1| zinc finger protein [Conopophaga peruviana]             33  1.4

>ref|NP_563685.2| leucine rich repeat protein family [Arabidopsis thaliana]
           gi|7487940|pir||T00914 leucine-rich repeat protein
           F21B7.28 - Arabidopsis thaliana
          Length = 397

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 27/80 (33%), Positives = 37/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 32  SYSSLLSA*LPSITSPPSSSSLLALLHRLNAERQNFMAATTQRDDMPANS--DELQPQLQ 205
           SY+ L     PSI S P  S+L+   + L      F++ T  R D+  NS    + P   
Sbjct: 155 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPPFLSQTLTRIDLKRNSLTGSISPASL 214

Query: 206 PPRVVNASLAANPAGGTRYH 265
           PP +   SLA N   G+ YH
Sbjct: 215 PPSLQYLSLAWNQLTGSVYH 234

>pir||A86166 protein F21B7.6 [imported] - Arabidopsis thaliana
           gi|9280642|gb|AAF86511.1|AC002560_4 F21B7.6 [Arabidopsis
           thaliana] gi|12083226|gb|AAG48772.1|AF332409_1 unknown
           protein [Arabidopsis thaliana]
          Length = 395

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 27/80 (33%), Positives = 37/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 32  SYSSLLSA*LPSITSPPSSSSLLALLHRLNAERQNFMAATTQRDDMPANS--DELQPQLQ 205
           SY+ L     PSI S P  S+L+   + L      F++ T  R D+  NS    + P   
Sbjct: 153 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPPFLSQTLTRIDLKRNSLTGSISPASL 212

Query: 206 PPRVVNASLAANPAGGTRYH 265
           PP +   SLA N   G+ YH
Sbjct: 213 PPSLQYLSLAWNQLTGSVYH 232

>ref|XP_328560.1| hypothetical protein [Neurospora crassa] gi|28924767|gb|EAA33879.1|
            hypothetical protein [Neurospora crassa]
          Length = 1541

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 20/51 (39%), Positives = 24/51 (46%)
 Frame = +2

Query: 59   LPSITSPPSSSSLLALLHRLNAERQNFMAATTQRDDMPANSDELQPQLQPP 211
            LP+I S P S SL+  +     E+Q   AA TQ    P NS   Q    PP
Sbjct: 1206 LPAIPSRPRSQSLINAIKEEEEEKQKAAAAATQMSSKPDNSTATQSGGNPP 1256

>ref|ZP_00053494.1| COG0529: Adenylylsulfate kinase and related kinases
           [Magnetospirillum magnetotacticum]
          Length = 795

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 22/65 (33%), Positives = 33/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 123 PSARTSWRQPHNVTTCRPILTNCSPSC-SRRAWSTPAWLLTRLAAHGTIPQLA--APRTA 293
           PS  +   +P++ T+ RPI +   P C S R W  P W+   +++  T P L   +PRTA
Sbjct: 31  PSGTSRTSRPNSGTSSRPI-SRPEPICVSTRCWPGPNWMCGAISSARTFPWLTSISPRTA 89

Query: 294 PAATA 308
               A
Sbjct: 90  SVTVA 94

>gb|AAO84555.1| zinc finger protein [Conopophaga peruviana]
          Length = 396

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
 Frame = +3

Query: 156 NVTTCRPI-LTNCSPSCSRRAWSTPAWLLTRLAAHGTIPQLAAPRTAPAATARMQRQI 326
           +VTT  P  +T   PS +R  +S+PA       AH T P  +   T P+ TA  Q Q+
Sbjct: 315 SVTTSYPSSITTSYPSPARTVYSSPAPSSYPSPAHTTFPSPSIATTYPSGTATFQTQV 372



EST assemble image


clone accession position
1 HC062d01_r AV636647 1 334
2 MX226h06_r BP090641 1 244




Chlamydomonas reinhardtii
Kazusa DNA Research Institute