KCC003937A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003937A_C01 KCC003937A_c01
ctgatgcagacttacagtgctgtgtacagtgctgcgtccccacgttgcaacacggaccgc
gctgttccaaggccaaaggcACGACGCGAGCGGGACCACCTCGTGAATGAATGCGAGCAC
GCTTTCAGGGGAACACACCAGGCAATGCTACTCCCTTCCCAAGCGGAAGTTGTCCAGTTC
AATTCTTGGGGCACGGGCGCAATTGACCGCTGCACTGCTTCTACCTACCCACAACACCTA
CACACACATACCTATTGCCGGCACACCGGCTTTACCCCCTGCAATCACAGCGGGCAACTC
CACTGCATCAGTAGGCACCAAAGGATGGCTGCAAGCACGCAACCGCCAGCCGGTAACTTC
GCGCCCGTGTCCGTGCCTTGACCAGTGTCGATGCCTACAGCCGCAGGTGGCGAGGAAATG
CAATTGTATGGCCGGGCCGAGCCAAGTGCGCCCCACGCAACTTCCACTCTAGGGTACTCA
AGCCCCGCATTTGTATGTGGCGTGTGCGGCGGCGCCAAGATACATGCATCGAAACCCGAC
TGCGTTCATTGATAGCAAACGCAAGACGTTGTTTAAGTCTAAAACAGCCGCTGCGTGTTC
TCCTTGTGCGTGCGTGTTCACTTCTGGCGAGTTCAGTTTCGTTACGCCGTTTGTACGGCA
GGGTCCCTTGCTTGCATCTCCGTGTCTAGCCGTTACAGGCCAAGACTCGTTCTTCAAAGC
AGGGGCAGCCACCAATGGAATATCTAAACGATTACCAACGTGACGTTCCATTTGTGTCCC
GCCATCGCTCGTCGTCCACAAGAACACATGAATAGCCACAAACGACGAGACGTGCACGGG
CCCTGAAGAAGCCAGGACACACGCATCACACCCTTATCAGCAAGGAGGAACCCGGGGCCT
TCACTTCTCTCTACTAAACGTACGGTAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003937A_C01 KCC003937A_c01
         (928 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_050887.1| photochlorophyllide reductase subunit ChlB [Nep...    36  0.80
sp|P95463|CHLB_PLEBO Light-independent protochlorophyllide reduc...    36  0.80
ref|ZP_00111065.1| COG2710: Nitrogenase molybdenum-iron protein,...    36  0.80
ref|NP_442044.1| protochlorophyllide reductase ChlB subunit [Syn...    36  1.0
ref|NP_487481.1| protochlorophyllide reductase ChlB subunit [Nos...    36  1.0

>ref|NP_050887.1| photochlorophyllide reductase subunit ChlB [Nephroselmis olivacea]
           gi|11467909|ref|NP_050960.1| photochlorophyllide
           reductase subunit ChlB [Nephroselmis olivacea]
           gi|13878437|sp|Q9T467|CHLB_NEPOL Light-independent
           protochlorophyllide reductase subunit B (LI-POR subunit
           B) (DPOR subunit B) gi|5880765|gb|AAD54858.1|AF137379_81
           ChlB subunit of protochlorophyllide reductase
           [Nephroselmis olivacea]
           gi|5880838|gb|AAD54931.1|AF137379_154 ChlB subunit of
           protochlorophyllide reductase [Nephroselmis olivacea]
          Length = 531

 Score = 36.2 bits (82), Expect = 0.80
 Identities = 17/23 (73%), Positives = 20/23 (86%), Gaps = 2/23 (8%)
 Frame = -2

Query: 780 GTQMERHVGNRLDIP--LVAAPA 718
           GTQMERHVG RLDIP  +++APA
Sbjct: 377 GTQMERHVGKRLDIPCGVISAPA 399

>sp|P95463|CHLB_PLEBO Light-independent protochlorophyllide reductase subunit B (LI-POR
           subunit B) (DPOR subunit B) gi|1732450|dbj|BAA11312.1|
           light-independent protochlorophyllide reductase subunit
           [Plectonema boryanum]
          Length = 508

 Score = 36.2 bits (82), Expect = 0.80
 Identities = 19/31 (61%), Positives = 25/31 (80%), Gaps = 2/31 (6%)
 Frame = -2

Query: 780 GTQMERHVGNRLDIP--LVAAPALKNESWPV 694
           GTQMERHVG RLDIP  ++AAP +  +++PV
Sbjct: 375 GTQMERHVGKRLDIPCGVIAAP-IHIQNFPV 404

>ref|ZP_00111065.1| COG2710: Nitrogenase molybdenum-iron protein, alpha and beta chains
           [Nostoc punctiforme]
          Length = 519

 Score = 36.2 bits (82), Expect = 0.80
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = -2

Query: 780 GTQMERHVGNRLDIP--LVAAPALKNESWPVTARHGDASKGPCRTNGVTKL 634
           GTQMERHVG RLDIP  ++AAP +  +++P+  +     +G   TN +T L
Sbjct: 386 GTQMERHVGKRLDIPCGVIAAP-IHVQNFPIGYKPFMGYEG---TNQITDL 432

>ref|NP_442044.1| protochlorophyllide reductase ChlB subunit [Synechocystis sp. PCC
           6803] gi|10719938|sp|Q55607|CHLB_SYNY3 Light-independent
           protochlorophyllide reductase subunit B (LI-POR subunit
           B) (DPOR subunit B) gi|7431631|pir||S76262
           protochlorophyllide reductase (EC 1.3.1.33) 57K chain
           [similarity] - Synechocystis sp. (strain PCC 6803)
           gi|1001489|dbj|BAA10114.1| protochlorophyllide reductase
           ChlB subunit [Synechocystis sp. PCC 6803]
          Length = 508

 Score = 35.8 bits (81), Expect = 1.0
 Identities = 17/22 (77%), Positives = 19/22 (86%), Gaps = 2/22 (9%)
 Frame = -2

Query: 780 GTQMERHVGNRLDIP--LVAAP 721
           GTQMERHVG RLDIP  ++AAP
Sbjct: 375 GTQMERHVGKRLDIPCGVIAAP 396

>ref|NP_487481.1| protochlorophyllide reductase ChlB subunit [Nostoc sp. PCC 7120]
           gi|21263469|sp|Q8YRK5|CHLB_ANASP Light-independent
           protochlorophyllide reductase subunit B (LI-POR subunit
           B) (DPOR subunit B) gi|25284512|pir||AB2236
           protochlorophyllide reductase ChlB chain [imported] -
           Nostoc sp. (strain PCC 7120) gi|17132574|dbj|BAB75140.1|
           protochlorophyllide reductase ChlB subunit [Nostoc sp.
           PCC 7120]
          Length = 508

 Score = 35.8 bits (81), Expect = 1.0
 Identities = 17/22 (77%), Positives = 19/22 (86%), Gaps = 2/22 (9%)
 Frame = -2

Query: 780 GTQMERHVGNRLDIP--LVAAP 721
           GTQMERHVG RLDIP  ++AAP
Sbjct: 375 GTQMERHVGKRLDIPCGVIAAP 396



EST assemble image


clone accession position
1 CL69c12_r AV396783 1 491
2 MX255a08_r BP092503 304 796
3 LCL048a05_r AV628850 644 928




Chlamydomonas reinhardtii
Kazusa DNA Research Institute