KCC003489A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003489A_C01 KCC003489A_c01
gtgaaatttgtagcgtgtccattagcacttgtttCTTTCCTCGCTAACGCCGACACACAG
CAGCGCAACTATGCAGCAGACTGTGCTCCGCGCGTCCTCCGGCGCCGTCAGCGGCCGCCC
CACCGCTGTGCCTGTCGCCACTCGCGCCAGCCAGCGTGGTCGTGTTGCCCTGCGCCCGGT
TGCCGCTGCCATTCTGAACAAGCCGGACAGCGATGAGGGCCTGACCTACAAGAAGGCCGG
TGTCGATATTGACGCTGGTGATGAGCTGGTGGACCGCATTAAGAAGATGAACCCCAAGGC
CAACATCGGTGGCTTCGGCGGTCTGGTGCCCTTCGGCGACTCTTACTTGGTGGCCGGCAC
CGATGGCGTGGGCACCAAGCTCAAGCTCGCATTCGACCTGAACAAGCACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003489A_C01 KCC003489A_c01
         (411 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191061.1| phosphoribosylformylglycinamidine cyclo-ligase ...   100  8e-21
pir||JQ2256 phosphoribosylformylglycinamidine cyclo-ligase (EC 6...   100  8e-21
emb|CAB41083.1| phosphoribosylformylglycinamidine cyclo-ligase (...    98  2e-20
sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-lig...    96  1e-19
gb|AAO39864.1| putative 5'-phosphoribosyl-5-aminoimidazole synth...    96  1e-19

>ref|NP_191061.1| phosphoribosylformylglycinamidine cyclo-ligase precursor
           [Arabidopsis thaliana] gi|21264504|sp|Q05728|PUR5_ARATH
           Phosphoribosylformylglycinamidine cyclo-ligase,
           chloroplast precursor (AIRS)
           (Phosphoribosyl-aminoimidazole synthetase) (AIR
           synthase) gi|11272444|pir||T47640
           phosphoribosylformylglycinamidine cyclo-ligase precursor
           - Arabidopsis thaliana gi|7329631|emb|CAB82696.1|
           phosphoribosylformylglycinamidine cyclo-ligase precursor
           [Arabidopsis thaliana] gi|16974615|gb|AAL31210.1|
           AT3g55010/T15C9_10 [Arabidopsis thaliana]
           gi|22655452|gb|AAM98318.1| At3g55010/T15C9_10
           [Arabidopsis thaliana]
          Length = 389

 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 57/104 (54%), Positives = 63/104 (59%)
 Frame = +2

Query: 98  SGAVSGRPTAVPVATRASQRGRVALRPVAAAILNKPDSDEGLTYKKAGVDIDAGDELVDR 277
           S   S +P +V  A     R RV          +K D  + L YK +GVDIDAG ELV R
Sbjct: 25  SSVSSPKPFSVSFAQTTRTRTRVLSMSKKDGRTDKDDDTDSLNYKDSGVDIDAGAELVKR 84

Query: 278 IKKMNPKANIGGFGGLVPFGDSYLVAGTDGVGTKLKLAFDLNKH 409
           I KM P   IGGFGGL P GDSYLVAGTDGVGTKLKLAF+   H
Sbjct: 85  IAKMAP--GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIH 126

>pir||JQ2256 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
           precursor - Arabidopsis thaliana
           gi|289188|gb|AAC37341.1|
           5'-phosphoribosyl-5-aminoimidazole synthetase
          Length = 355

 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 57/104 (54%), Positives = 63/104 (59%)
 Frame = +2

Query: 98  SGAVSGRPTAVPVATRASQRGRVALRPVAAAILNKPDSDEGLTYKKAGVDIDAGDELVDR 277
           S   S +P +V  A     R RV          +K D  + L YK +GVDIDAG ELV R
Sbjct: 25  SSVSSPKPFSVSFAQTTRTRTRVLSMSKKDGRTDKDDDTDSLNYKDSGVDIDAGAELVKR 84

Query: 278 IKKMNPKANIGGFGGLVPFGDSYLVAGTDGVGTKLKLAFDLNKH 409
           I KM P   IGGFGGL P GDSYLVAGTDGVGTKLKLAF+   H
Sbjct: 85  IAKMAP--GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIH 126

>emb|CAB41083.1| phosphoribosylformylglycinamidine cyclo-ligase (fragment)
           [Arabidopsis thaliana]
          Length = 125

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 56/100 (56%), Positives = 62/100 (62%)
 Frame = +2

Query: 98  SGAVSGRPTAVPVATRASQRGRVALRPVAAAILNKPDSDEGLTYKKAGVDIDAGDELVDR 277
           S   S +P +V  A     R RV          +K D  + L YK +GVDIDAG ELV R
Sbjct: 25  SSVSSPKPFSVSFAQTTRTRTRVLSMSKKDGRTDKDDDTDSLNYKDSGVDIDAGAELVKR 84

Query: 278 IKKMNPKANIGGFGGLVPFGDSYLVAGTDGVGTKLKLAFD 397
           I KM P   IGGFGGL P GDSYLVAGTDGVGTKLKLAF+
Sbjct: 85  IAKMAP--GIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFE 122

>sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
           precursor (AIRS) (Phosphoribosyl-aminoimidazole
           synthetase) (AIR synthase) gi|7437995|pir||T10963
           phosphoribosylformylglycinamidine cyclo-ligase (EC
           6.3.3.1) - cowpea gi|945060|gb|AAC14578.1|
           aminoimidazole ribonucleotide (AIRS) synthetase [Vigna
           unguiculata]
          Length = 388

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 58/106 (54%), Positives = 64/106 (59%)
 Frame = +2

Query: 92  ASSGAVSGRPTAVPVATRASQRGRVALRPVAAAILNKPDSDEGLTYKKAGVDIDAGDELV 271
           A++  V   P     A  +  R R   R VA A        +GLTY+ AGVDIDAG ELV
Sbjct: 30  AATSLVISSPIGHDGAVSSVSRSRKTSRIVAEA-------SQGLTYRDAGVDIDAGAELV 82

Query: 272 DRIKKMNPKANIGGFGGLVPFGDSYLVAGTDGVGTKLKLAFDLNKH 409
            RI KM P   IGGFGGL P GDSYLVAGTDGVGTKL LAF+   H
Sbjct: 83  RRIAKMAP--GIGGFGGLYPLGDSYLVAGTDGVGTKLMLAFETGIH 126

>gb|AAO39864.1| putative 5'-phosphoribosyl-5-aminoimidazole synthetase [Oryza
           sativa (japonica cultivar-group)]
           gi|31249753|gb|AAP46245.1| putative
           5'-phosphoribosyl-5-aminoimidazole synthetase [Oryza
           sativa (japonica cultivar-group)]
          Length = 398

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
 Frame = +2

Query: 116 RPTAVPVATRASQRGRVALRPVAAAILNK--PDSDEGLTYKKAGVDIDAGDELVDRIKKM 289
           +P ++ +A  AS   RVA+   +A          +EG+TYK AGVDIDAG ELV RI ++
Sbjct: 36  QPRSLRLAAGASGMRRVAVACSSAGAGGSGVEGDEEGMTYKGAGVDIDAGTELVRRIGRL 95

Query: 290 NPKANIGGFGGLVPFGDSYLVAGTDGVGTKLKLAFDLNKH 409
            P   IGGFGGL PFGD +LVAGTDGVGTKLKLAF+   H
Sbjct: 96  APA--IGGFGGLFPFGDQFLVAGTDGVGTKLKLAFETGIH 133



EST assemble image


clone accession position
1 MXL055g12_r BP096274 1 411
2 MXL078c12_r BP097602 35 399




Chlamydomonas reinhardtii
Kazusa DNA Research Institute