KCC003481A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003481A_C01 KCC003481A_c01
TTCTTGATAAGTGTAGTGTAAGCGATGTCCTAAGTGTTCAGAATTGCTCCAGTTTCGTTG
TGTGAACTTGCGCTAATTGATGTGACTCGGTTTTGACATCTTGAATGGTCACATTATTCC
TGCTATATCCACAGTACTTTGAAAGCACTCATCTTAACTCTCGTGCAACCCTGAGTCGAA
GACCCGCTCGGTGCCCGGCCGTGAACCGACATGTCCGGGCCCGTTGCTGAGCGCGTTCTA
AACACGCCAGCTCTGGTGGAGACAATAGCGTCGCTAGCTTCAGCAAATGACGTCGCAGTT
GGGCTTCGAGGCGTGTCGCATGTGACGCGGCAGGCTCTCGGCCCCAAGGCCCACGCCACG
GTGCACTTGTCGGAGCCGGTTCCCGCCAAGGTCTTCGCGGACAAGTGGGCTGCCCCCGGT
GCCATGTACAGCCTCTCATACGTCGACCGCATCAAGCTGCTCTCACTCACGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003481A_C01 KCC003481A_c01
         (473 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_327365.1| hypothetical protein [Neurospora crassa] gi|289...    37  0.091
dbj|BAC85688.1| unnamed protein product [Homo sapiens]                 37  0.091
ref|ZP_00052185.1| COG1028: Dehydrogenases with different specif...    37  0.15
gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15...    35  0.45
ref|NP_775891.1| hypothetical protein FLJ23825 [Homo sapiens] gi...    35  0.59

>ref|XP_327365.1| hypothetical protein [Neurospora crassa] gi|28921832|gb|EAA31108.1|
           hypothetical protein [Neurospora crassa]
          Length = 619

 Score = 37.4 bits (85), Expect = 0.091
 Identities = 30/91 (32%), Positives = 44/91 (47%), Gaps = 5/91 (5%)
 Frame = +1

Query: 208 DMSGPVAERVLNTP---ALVETIASLASANDVAVGLRGVSHVTRQ--ALGPKAHATVHLS 372
           +M  P   RV   P   A+++TIASL S N   + L  +S   +Q  AL P   ++V   
Sbjct: 170 NMMVPKDRRVEPKPRYQAVLDTIASLGSVNRFTINLSDLSPDIQQELALLPSVFSSVR-- 227

Query: 373 EPVPAKVFADKWAAPGAMYSLSYVDRIKLLS 465
            P       +KWA PG++Y  ++   I L S
Sbjct: 228 -PFGRLQADEKWAPPGSLYQYTFAQVIDLTS 257

>dbj|BAC85688.1| unnamed protein product [Homo sapiens]
          Length = 258

 Score = 37.4 bits (85), Expect = 0.091
 Identities = 35/106 (33%), Positives = 47/106 (44%)
 Frame = +3

Query: 132 QYFESTHLNSRATLSRRPARCPAVNRHVRARC*ARSKHASSGGDNSVASFSK*RRSWASR 311
           Q F+  H     +LS  P R P ++    A      + ASS G  +    S  R   ASR
Sbjct: 58  QAFQGQHPPPVRSLSSGPPRAPRLSP---AGASPGPQSASSRGQRAS---SPARSGRASR 111

Query: 312 RVACDAAGSRPQGPRHGALVGAGSRQGLRGQVGCPRCHVQPLIRRP 449
             +   + + P+ PR  + VG+GSR G RG    P  H  P  RRP
Sbjct: 112 PTSPAESTAPPRSPRTSSRVGSGSRVGTRG----PLAHRYPHRRRP 153

>ref|ZP_00052185.1| COG1028: Dehydrogenases with different specificities (related to
           short-chain alcohol dehydrogenases) [Magnetospirillum
           magnetotacticum]
          Length = 378

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 16/44 (36%), Positives = 22/44 (49%)
 Frame = +2

Query: 338 SAPRPTPRCTCRSRFPPRSSRTSGLPPVPCTASHTSTASSCSHS 469
           ++P P P C C  RF  R+  TS  P  P  A+ + T S  + S
Sbjct: 7   TSPSPWPSCRCSRRFARRTPTTSWSPTAPAAATRSMTGSGATRS 50

>gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15]
           gi|18025470|gb|AAK95414.1| EBNA-2 [cercopithicine
           herpesvirus 15]
          Length = 605

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 15/28 (53%), Positives = 16/28 (56%)
 Frame = -2

Query: 400 PRRPWREPAPTSAPWRGPWGREPAASHA 317
           PR PWR P+P  AP R PWG  P    A
Sbjct: 282 PRVPWR-PSPVQAPPRAPWGPSPTKQQA 308

>ref|NP_775891.1| hypothetical protein FLJ23825 [Homo sapiens]
           gi|23272018|gb|AAH35561.1| Hypothetical protein FLJ23825
           [Homo sapiens]
          Length = 493

 Score = 34.7 bits (78), Expect = 0.59
 Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 5/43 (11%)
 Frame = -2

Query: 436 RGCTWHRGQPTCPRRPWREPA---PTSAPWRGPWGR--EPAAS 323
           R  +WH G P+C  R WR P     T  PWR  W +   PA S
Sbjct: 354 RSASWHSGAPSC--RSWRLPCSWLSTRMPWRSGWRKTCTPACS 394



EST assemble image


clone accession position
1 MXL049d08_r BP095920 1 401
2 MXL062b06_r BP096635 1 473




Chlamydomonas reinhardtii
Kazusa DNA Research Institute