KCC003476A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003476A_C01 KCC003476A_c01
GTGACATAACGCGCGTGCCTACAAATCCTACACCTGCCGCCGAGCTACCAAAGAATCGCC
TTCTAGAAGCGGAGCAAGCAGCGTTACGCAGGATGCAGTCCGCACGCGTTGTAGCCGCGA
CTCACAAGGTGGCTGCCAAGCATGGCAGCAACATGGTTTGCCGGAGCGCCGCTGCAGTCA
GCACCGCGCCGGCGCAGACCGTGGCGCCTCCCACGTCCTTCGACCTGGGCGACGGCTCCG
CGCCGGTGCCGGTGCCCGCGGCCGTGGCGCCCCTGTTCGCGCCCCTCACCCTGACCGGCG
CCCCCAAGAAGACGGCCTTCCAGCTCACCAACCGCATCGTGTACGCGCCGCTCACACGCT
GCCGCGCTGTCGGCAACCTGCAGCCGCCTCAGGCCGCAGAGTACTACAGCCAGCGCACCG
TGCCCGGCACGCTTCTCATCACGGAGGCGACCAACATCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003476A_C01 KCC003476A_c01
         (459 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC20139.1| 12-oxophytodienoic acid reductase [Oryza sativa]...    65  4e-10
ref|NP_177794.1| 12-oxophytodienoate reductase (OPR1) [Arabidops...    62  4e-09
gb|AAM65337.1| 12-oxophytodienoate reductase (OPR1) [Arabidopsis...    62  4e-09
ref|NP_172411.1| 12-oxophytodienoate reductase, putative [Arabid...    58  4e-08
emb|CAA71627.1| 12-oxophytodienoate reductase [Arabidopsis thali...    57  8e-08

>dbj|BAC20139.1| 12-oxophytodienoic acid reductase [Oryza sativa]
           gi|30140333|emb|CAD89604.1| oxo-phytodienoic acid
           reductase [Oryza sativa (japonica cultivar-group)]
          Length = 380

 Score = 65.1 bits (157), Expect = 4e-10
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
 Frame = +3

Query: 240 APVPVPAAVA-PLFAPLTLTGAPKKTAFQLTNRIVYAPLTRCRAVGNLQPPQAAEYYSQR 416
           AP  V AA A PL  P       K    +L++R+V APLTRCR+ GN+  P AA YYSQR
Sbjct: 4   APAKVAAAAAIPLLTPY------KMGQLELSHRVVLAPLTRCRSYGNVPQPHAAVYYSQR 57

Query: 417 TVPGTLLITEATNI 458
              G LLI EAT+I
Sbjct: 58  ATRGGLLIAEATDI 71

>ref|NP_177794.1| 12-oxophytodienoate reductase (OPR1) [Arabidopsis thaliana]
           gi|25325948|pir||B96795 hypothetical protein F28O16.5
           [imported] - Arabidopsis thaliana
           gi|3882355|gb|AAC78440.1| 12-oxophytodienoate reductase
           OPR1 [Arabidopsis thaliana]
           gi|6143902|gb|AAF04448.1|AC010718_17 12-oxophytodienoate
           reductase (OPR1); 13754-15043 [Arabidopsis thaliana]
           gi|18650650|gb|AAL75894.1| At1g76680/F28O16_5
           [Arabidopsis thaliana]
          Length = 372

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 30/51 (58%), Positives = 36/51 (69%)
 Frame = +3

Query: 306 KKTAFQLTNRIVYAPLTRCRAVGNLQPPQAAEYYSQRTVPGTLLITEATNI 458
           K   F L++R+V APLTR R+ GN+  P AA YYSQRT PG  LITEAT +
Sbjct: 17  KMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGV 67

>gb|AAM65337.1| 12-oxophytodienoate reductase (OPR1) [Arabidopsis thaliana]
          Length = 372

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 30/51 (58%), Positives = 36/51 (69%)
 Frame = +3

Query: 306 KKTAFQLTNRIVYAPLTRCRAVGNLQPPQAAEYYSQRTVPGTLLITEATNI 458
           K   F L++R+V APLTR R+ GN+  P AA YYSQRT PG  LITEAT +
Sbjct: 17  KMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGV 67

>ref|NP_172411.1| 12-oxophytodienoate reductase, putative [Arabidopsis thaliana]
           gi|25325947|pir||C86227 hypothetical protein [imported]
           - Arabidopsis thaliana gi|3482915|gb|AAC33200.1| Similar
           to 12-oxophytodienoate reductase, gi|2765083  and
           old-yellow-enzyme homolog, gi|2232254 [Arabidopsis
           thaliana]
          Length = 324

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 27/47 (57%), Positives = 33/47 (69%)
 Frame = +3

Query: 318 FQLTNRIVYAPLTRCRAVGNLQPPQAAEYYSQRTVPGTLLITEATNI 458
           F LT+RIV AP+ R R+ GN+  P  A YY QRT PG LLI+EAT +
Sbjct: 4   FNLTHRIVMAPMARMRSYGNIPQPHVALYYCQRTTPGGLLISEATGV 50

>emb|CAA71627.1| 12-oxophytodienoate reductase [Arabidopsis thaliana]
          Length = 370

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 30/51 (58%), Positives = 36/51 (69%)
 Frame = +3

Query: 306 KKTAFQLTNRIVYAPLTRCRAVGNLQPPQAAEYYSQRTVPGTLLITEATNI 458
           K   F L++R+V APLTR R+ GN+  P AA YYSQRT PG  LITEAT +
Sbjct: 17  KMGRFNLSHRVVLAPLTRQRSYGNV--PHAAIYYSQRTTPGGFLITEATGV 65



EST assemble image


clone accession position
1 MXL043h08_r BP095563 1 459
2 MXL091c01_r BP098305 1 422




Chlamydomonas reinhardtii
Kazusa DNA Research Institute