Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003463A_C01 KCC003463A_c01
(376 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200854.1| protein transport protein subunit - like [Arabi... 72 2e-12
ref|NP_182033.1| transport protein SEC61 beta-subunit -related [... 69 1e-11
ref|NP_191613.1| transport protein subunit - like [Arabidopsis t... 66 1e-10
dbj|BAC42429.1| putative transport protein subunit [Arabidopsis ... 65 2e-10
gb|AAH41270.1| Similar to protein translocation complex beta [Xe... 59 2e-08
>ref|NP_200854.1| protein transport protein subunit - like [Arabidopsis thaliana]
gi|9757748|dbj|BAB08229.1| gene_id:MUF9.9~unknown
protein [Arabidopsis thaliana]
gi|26451290|dbj|BAC42746.1| protein transport protein
subunit - like [Arabidopsis thaliana]
gi|28973101|gb|AAO63875.1| putative protein transport
protein subunit [Arabidopsis thaliana]
Length = 109
Score = 72.0 bits (175), Expect = 2e-12
Identities = 43/94 (45%), Positives = 50/94 (52%), Gaps = 10/94 (10%)
Frame = +3
Query: 12 SQSQASTLV----ARGGRSSSNAPTGAAGALRRRPVRGSGG------SGTTKAQQAAMNF 161
SQSQ ST AR G ++ A +RRR + G GG SG + F
Sbjct: 6 SQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRF 65
Query: 162 YTDDTPGWKMSPVVVITMSLSFIAFVTILHVVGK 263
YTDD PG K+SP VV+ MSL FI FVT LHV GK
Sbjct: 66 YTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99
>ref|NP_182033.1| transport protein SEC61 beta-subunit -related [Arabidopsis
thaliana] gi|585960|sp|P38389|S61B_ARATH Protein
transport protein SEC61 beta subunit
gi|25456578|pir||T52378 probable transport protein SEC61
beta-chain [imported] - Arabidopsis thaliana
gi|433665|emb|CAA81412.1| Sec61 beta-subunit homolog
[Arabidopsis thaliana]
gi|4895244|gb|AAD32829.1|AC007659_11 putative transport
protein SEC61 beta-subunit [Arabidopsis thaliana]
gi|24030258|gb|AAN41304.1| putative transport protein
SEC61 beta-subunit [Arabidopsis thaliana]
Length = 82
Score = 69.3 bits (168), Expect = 1e-11
Identities = 34/73 (46%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = +3
Query: 48 GRSSSNAPTGAAGALRRRPVRGSGGSGTTKAQQAAM-NFYTDDTPGWKMSPVVVITMSLS 224
G + A RR+P G+GG G + +M FYTDD PG K+SP VV+ MS+
Sbjct: 5 GAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIG 64
Query: 225 FIAFVTILHVVGK 263
FIAFV +LHV+GK
Sbjct: 65 FIAFVAVLHVMGK 77
>ref|NP_191613.1| transport protein subunit - like [Arabidopsis thaliana]
gi|11358899|pir||T47865 transport protein subunit-like -
Arabidopsis thaliana gi|7288002|emb|CAB81840.1|
transport protein subunit-like [Arabidopsis thaliana]
Length = 81
Score = 66.2 bits (160), Expect = 1e-10
Identities = 36/77 (46%), Positives = 45/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 45 GGRSSSNAPTGAAGALRRRPVRGS----GGSGTTKAQQAAMNFYTDDTPGWKMSPVVVIT 212
GG + A RR+P GS GG+GT + FYTDD PG K+SP VV+
Sbjct: 4 GGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTM------LQFYTDDAPGLKISPNVVLI 57
Query: 213 MSLSFIAFVTILHVVGK 263
MS+ FIAFV +LHV+GK
Sbjct: 58 MSIGFIAFVAVLHVMGK 74
>dbj|BAC42429.1| putative transport protein subunit [Arabidopsis thaliana]
Length = 81
Score = 65.1 bits (157), Expect = 2e-10
Identities = 35/77 (45%), Positives = 45/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 45 GGRSSSNAPTGAAGALRRRPVRGS----GGSGTTKAQQAAMNFYTDDTPGWKMSPVVVIT 212
GG + A +R+P GS GG+GT + FYTDD PG K+SP VV+
Sbjct: 4 GGAPQRGSAAATASMRKRKPAGGSSSAGGGAGTM------LQFYTDDAPGLKISPNVVLI 57
Query: 213 MSLSFIAFVTILHVVGK 263
MS+ FIAFV +LHV+GK
Sbjct: 58 MSIGFIAFVAVLHVMGK 74
>gb|AAH41270.1| Similar to protein translocation complex beta [Xenopus laevis]
Length = 96
Score = 58.5 bits (140), Expect = 2e-08
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +3
Query: 24 ASTLVARGGRSSSNA--PTGAAGALRRRPVRGSG----GSGTTKAQQAAMNFYTDDTPGW 185
++T VA GRS S A P A +R+R S G T+ FYT+D+PG
Sbjct: 7 SATNVAASGRSPSKAVAPRTAGSTVRQRKNASSSTRSAGRTTSAGTGGMWRFYTEDSPGL 66
Query: 186 KMSPVVVITMSLSFIAFVTILHVVGKFQKA 275
K+ PV V+ MSL FIA V +LH+ GK+ ++
Sbjct: 67 KVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
