KCC003458A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003458A_C01 KCC003458A_c01
gacCTTCACCTTGCTGTCACGTTTGACTGCCGTGGGCCAGGGGTTGAATATGCATAGCTT
TGCCAGCCAGAAAGCTAGTTCCAGGCTCAGCTCGATTGCATCGTCGCGTATTACTCCTTT
CGTTGGCAAAGCTCCCACTTCCATTCATAAACCTGCACGCTGCCTGGCGACCACCCACCA
AACCATGGAAGCGTCGACTTCTGGCTCAAGCACCTCGAGCGAGGTTGAGGCCCTGCGCGC
TCAAATCAGCAAGCTGGAGGCGACGCTGAAGGAGAAGGAGAAGCAGCTGGACACTGTGTA
CCCTTACTCGCGTTCATACAACAAGACTGCTGTTAACACTATCCTGGGCGCGGCGGACGG
GGGCAAGAGCCTGGTTGGCCAGACGCTGCGCGTGGGTGGCTGGGTGAAGACCGGCCGTGA
GGCTGGTGCGGGTGCCTTCTGCTTCCTTGAGGTCAACGATGGCTCCATGTTCGATAGCCT
GCAGGTGATGGTGTCGAAGGAGGTGGCGGAGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003458A_C01 KCC003458A_c01
         (513 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200479.1| asparaginyl-tRNA synthetase, cytoplasmic 1 (asp...    70  2e-11
ref|NP_177254.1| asparaginyl-tRNA synthetase, cytoplasmic (aspar...    68  8e-11
dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sati...    60  2e-08
pir||B64115 asparagine-tRNA ligase (EC 6.1.1.22) - Haemophilus i...    48  8e-05
emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana]     47  2e-04

>ref|NP_200479.1| asparaginyl-tRNA synthetase, cytoplasmic 1 (asparagine-tRNA ligase
           1) (SYNC1) [Arabidopsis thaliana]
           gi|20140329|sp|Q9SW96|SYN1_ARATH Asparaginyl-tRNA
           synthetase, cytoplasmic 1 (Asparagine--tRNA ligase 1)
           (AsnRS 1) gi|5670315|gb|AAD46681.1|AF170909_1 SYNC1
           protein [Arabidopsis thaliana]
           gi|10176772|dbj|BAB09886.1| SYNC1 protein [Arabidopsis
           thaliana]
          Length = 572

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = +2

Query: 320 NKTAVNTILGAADGGKSLVGQTLRVGGWVKTGREAGAGAFCFLEVNDGSMFDSLQVMV 493
           N+  + TIL   DGG  L GQT+R+GGWVK+GR+ G   F FL VNDGS   +LQVMV
Sbjct: 31  NRVLIRTILDRPDGGAGLAGQTVRIGGWVKSGRDQGKRTFSFLAVNDGSCPANLQVMV 88

>ref|NP_177254.1| asparaginyl-tRNA synthetase, cytoplasmic (asparagine-tRNA ligase),
           putative [Arabidopsis thaliana]
           gi|20140327|sp|Q9SSK1|SYN3_ARATH Asparaginyl-tRNA
           synthetase, cytoplasmic 3 (Asparagine--tRNA ligase 3)
           (AsnRS 3) gi|25406088|pir||B96734 hypothetical protein
           F15H11.17 [imported] - Arabidopsis thaliana
           gi|5902407|gb|AAD55509.1|AC008148_19 Similar to
           asparaginyl-tRNA synthetases [Arabidopsis thaliana]
          Length = 571

 Score = 67.8 bits (164), Expect = 8e-11
 Identities = 33/62 (53%), Positives = 42/62 (67%)
 Frame = +2

Query: 320 NKTAVNTILGAADGGKSLVGQTLRVGGWVKTGREAGAGAFCFLEVNDGSMFDSLQVMVSK 499
           ++  + +ILG   GG  L GQ +R+GGWVKTGR+ G G F FLEVNDGS   +LQVMV  
Sbjct: 31  DRVLIRSILG---GGAKLAGQKVRIGGWVKTGRQQGKGTFAFLEVNDGSCPANLQVMVDS 87

Query: 500 EV 505
            +
Sbjct: 88  SL 89

>dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)] gi|15408636|dbj|BAB64053.1| putative
           asparaginyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)]
          Length = 559

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 32/62 (51%), Positives = 42/62 (67%)
 Frame = +2

Query: 320 NKTAVNTILGAADGGKSLVGQTLRVGGWVKTGREAGAGAFCFLEVNDGSMFDSLQVMVSK 499
           ++T + +IL  ADG  +  G+ + VGGWVKTGRE G G F FLE+NDGS   +LQV+V  
Sbjct: 24  DRTRIRSIL--ADGA-ARAGERVVVGGWVKTGREQGKGTFAFLELNDGSCASNLQVLVDA 80

Query: 500 EV 505
            V
Sbjct: 81  AV 82

>pir||B64115 asparagine-tRNA ligase (EC 6.1.1.22) - Haemophilus influenzae
           (strain Rd KW20) gi|1574761|gb|AAC22949.1|
           asparaginyl-tRNA synthetase (asnS) [Haemophilus
           influenzae Rd]
          Length = 477

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 25/69 (36%), Positives = 42/69 (60%)
 Frame = +2

Query: 299 YPYSRSYNKTAVNTILGAADGGKSLVGQTLRVGGWVKTGREAGAGAFCFLEVNDGSMFDS 478
           Y   + +N + V +I+    G K  +G+T+ V GWV+T R++ AG   FL V DGS FD 
Sbjct: 3   YIQLQRFNMSKVASIVDVLQG-KVAIGETVTVRGWVRTRRDSKAG-LSFLAVYDGSCFDP 60

Query: 479 LQVMVSKEV 505
           +Q +++ ++
Sbjct: 61  IQAIINNDI 69

>emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 566

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 36/60 (59%)
 Frame = +2

Query: 323 KTAVNTILGAADGGKSLVGQTLRVGGWVKTGREAGAGAFCFLEVNDGSMFDSLQVMVSKE 502
           K  +  + G AD G S VGQ+L + GWV+T R     +  F+E+NDGS   +LQ +++ +
Sbjct: 90  KLRIAEVKGGADEGLSRVGQSLNIMGWVRTLR--SQSSVTFIEINDGSCLSNLQCVMTSD 147



EST assemble image


clone accession position
1 MXL024d10_r BP094525 1 480
2 MXL051e09_r BP096037 4 513




Chlamydomonas reinhardtii
Kazusa DNA Research Institute