KCC003454A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003454A_C01 KCC003454A_c01
ggctgacgcgcgttgcaggtgcttttgtctttggtcggggggcacgtgcagctgtgtgtc
gacttgggactggcctgtggACTGCGGCGGTGATTGTATTTGTGCCCTAAATGGTCAATA
GCCGCCCCTGAGTTGTTTGCGCCGCCGGTCCATGTTGGTTGGTTCGCGGCCGGTGGCCGG
CTTCTCAAAGGGTCAGAACAGTTGTGCTGGAGGCGAAAGTCAATCGGCAAAGAGCAGGAC
TAGCAATGTTTGCAGGTGCGAATGGTCCACTCTCGATGCGTCGTGCAATTTACGATGTGG
CAGGCCGGTGCATGGGCTATACAAATAGATCTGTAGGTGTCAATGATTTTCTGCGTGTGA
TTTTAATAACCAACAACCAACCCCGAGAAGATTAAGCTTATTCCCGCGTGTTCTCGATTT
TGCGGGGTGGTGCGACAAAGGGGCGGGTCGCGCATGCTCTGCGTGAGCAGCCGTGTGCAT
GGGGACGCGAACGTGTGTGCCCGCAACAGTCTTttgagcaaccctccagttttgtctctc
cgtgtaacggatactcgacaaaaaaaaa


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003454A_C01 KCC003454A_c01
         (568 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans     37  0.19
ref|NP_508603.1| putative protein, with at least 2 transmembrane...    37  0.19
ref|XP_340324.1| phosphatidylinositol 3-kinase, putative [Trypan...    36  0.32
ref|NP_508602.1| putative secreted or extracellular protein prec...    33  2.1
sp|Q03376|BAR3_CHITE Balbiani RING protein 3 precursor gi|84847|...    33  2.1

>pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans
          Length = 825

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 33/118 (27%), Positives = 42/118 (34%)
 Frame = -1

Query: 361 ITRRKSLTPTDLFV*PMHRPATS*IARRIESGPFAPANIASPALCRLTFASSTTVLTL*E 182
           +T   +L PT     P   P+T      + + P APAN+ +P    +   SSTT  T   
Sbjct: 670 VTTSPTLAPTSPTKLPTSPPST------VGTSPTAPANLTTPTTAPVNPTSSTTAPTAPV 723

Query: 181 AGHRPRTNQHGPAAQTTQGRLLTI*GTNTITAAVHRPVPSRHTAARAPRPKTKAPATR 8
               P T    P   TT     T   T T T        +  T      P T  P TR
Sbjct: 724 NPTSPTTAPTVPPVTTTTPTTTT--STTTTTTTTTTTTQTTPTTPVVTTPSTITPTTR 779

>ref|NP_508603.1| putative protein, with at least 2 transmembrane domains (81.0 kD)
           (XE123) [Caenorhabditis elegans]
           gi|14573793|gb|AAA96080.2| Hypothetical protein
           C12D12.1a [Caenorhabditis elegans]
          Length = 769

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 33/118 (27%), Positives = 42/118 (34%)
 Frame = -1

Query: 361 ITRRKSLTPTDLFV*PMHRPATS*IARRIESGPFAPANIASPALCRLTFASSTTVLTL*E 182
           +T   +L PT     P   P+T      + + P APAN+ +P    +   SSTT  T   
Sbjct: 614 VTTSPTLAPTSPTKLPTSPPST------VGTSPTAPANLTTPTTAPVNPTSSTTAPTAPV 667

Query: 181 AGHRPRTNQHGPAAQTTQGRLLTI*GTNTITAAVHRPVPSRHTAARAPRPKTKAPATR 8
               P T    P   TT     T   T T T        +  T      P T  P TR
Sbjct: 668 NPTSPTTAPTVPPVTTTTPTTTT--STTTTTTTTTTTTQTTPTTPVVTTPSTITPTTR 723

>ref|XP_340324.1| phosphatidylinositol 3-kinase, putative [Trypanosoma brucei]
           gi|33348357|gb|AAQ15683.1| phosphatidylinositol
           3-kinase, putative [Trypanosoma brucei]
          Length = 4277

 Score = 36.2 bits (82), Expect = 0.32
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
 Frame = -3

Query: 308 PACHIVNCTTHRE-W-----TIRTCKHC*SCSLPIDFRLQHNCSDPLRSRPPAANQPTWT 147
           P CH    TT R+ W     T+ T + C S S  +    Q+  +D  R+RP AA+     
Sbjct: 478 PLCHFFYATTRRDGWRLEALTLLTTQVCASFSAVLG---QNVRADIERNRPRAAHHHGNV 534

Query: 146 GGANN---SGAAIDHLGHKYN------HRRSPQASPKSTHSCTCPPT 33
            G+N+   +G A +H   K N        +S  ASP  T S  C PT
Sbjct: 535 LGSNSCSTTGNASNHKEEKSNAPLLRSQAKSSSASPPPTTSLICSPT 581

>ref|NP_508602.1| putative secreted or extracellular protein precursor (69.2 kD)
           (XE123) [Caenorhabditis elegans]
           gi|16041616|gb|AAL00856.2|U51998_2 Hypothetical protein
           C12D12.1b [Caenorhabditis elegans]
          Length = 648

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 27/90 (30%), Positives = 32/90 (35%)
 Frame = -1

Query: 277 IESGPFAPANIASPALCRLTFASSTTVLTL*EAGHRPRTNQHGPAAQTTQGRLLTI*GTN 98
           I + P APAN+ +P    +   SSTT  T       P T    P   TT     T   T 
Sbjct: 515 IGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTT--STT 572

Query: 97  TITAAVHRPVPSRHTAARAPRPKTKAPATR 8
           T T        +  T      P T  P TR
Sbjct: 573 TTTTTTTTTTQTTPTTPVVTTPSTITPTTR 602

>sp|Q03376|BAR3_CHITE Balbiani RING protein 3 precursor gi|84847|pir||S08167 Balbiani
           ring 3 protein - midge (Chironomus tentans)
           gi|7058|emb|CAA36506.1| balbiani ring 3 (BR3)
           [Chironomus tentans]
          Length = 1700

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
 Frame = +2

Query: 14  CRCFC----------LWSGGTCSCVSTWDWPV------DCGGDCICALNGQ*PPLSCLRR 145
           CRC C          +W    C C+   D PV       CG  C C    + P   C   
Sbjct: 361 CRCECPVKHDCKNGKVWDETICQCICPRDAPVCTAGKERCGESCECKCINREPKEGC--A 418

Query: 146 RSMLVGSRPVAGFSKGQNSCAGGESQSAKSRTSNVCRCEWSTLDASCNLR 295
           + ++                + G   S KS     C+CE     + C L+
Sbjct: 419 KPLVWNENTCKCVCPADKQMSPGGCGSGKSFNKLTCQCECDQSASKCGLK 468

 Score = 31.6 bits (70), Expect = 7.9
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +2

Query: 2    ADARCRCFCLWSGGTCSCVSTWDW-PVDCGGDCICALNGQ*PPLSCLRRRSMLVGSRPVA 178
            +D  C C C  S    +C+S  +W  V C  DC        P   C       +  +   
Sbjct: 832  SDEFCDCVCPNSASMKTCLSPKEWNKVTCTCDC------NPPKPDCCPGTQKWMDDKCKC 885

Query: 179  GFSKGQNSCAGGESQSAKSRTSNVCRCEWSTLDASCNLR 295
            G    Q  CAGG+  +  + +   C C    LD + N +
Sbjct: 886  GCPNAQTDCAGGKKFNDFTCS---CGCPSGKLDCTGNTK 921



EST assemble image


clone accession position
1 MXL022f12_r BP094411 1 513
2 MXL027h11_r BP094712 202 568




Chlamydomonas reinhardtii
Kazusa DNA Research Institute