Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003435A_C01 KCC003435A_c01
(614 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL85711.1|AF474340_1 ABC transporter ABCC.8 [Dictyostelium d... 49 8e-05
ref|NP_862421.1| putative hydroxyproline-rich protein [Micrococc... 44 0.002
sp|P08563|POLS_RUBVM Structural polyprotein [Contains: Nucleocap... 42 0.005
sp|P19725|POLS_RUBVR Structural polyprotein [Contains: Nucleocap... 42 0.009
sp|P21480|POLS_RUBVH Structural polyprotein [Contains: Nucleocap... 41 0.012
>gb|AAL85711.1|AF474340_1 ABC transporter ABCC.8 [Dictyostelium discoideum]
Length = 1593
Score = 48.5 bits (114), Expect = 8e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 283 NDTFIERLFLTWVYAVVGKGRKGTIKPEELRMPGDQAAEVAVS-KFDAAWAEELKLRNSG 459
N RL W+ +V+ KG K ++ ++ G+ + +S KF+ AW E+LK N
Sbjct: 208 NANLFSRLTFWWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQLKKPN-- 265
Query: 460 DATKKPSLVRALRRSFGVDVLIAAAWKLTWSCFVLVGAFYFVRSL 594
PSL AL ++FG IAA +K+ + VG R L
Sbjct: 266 -----PSLPWALAKAFGPHFYIAALFKIIQDLLIFVGPTLLKRVL 305
>ref|NP_862421.1| putative hydroxyproline-rich protein [Micrococcus sp. 28]
gi|18025409|gb|AAK62517.1| putative hydroxyproline-rich
protein [Micrococcus sp. 28]
Length = 406
Score = 43.9 bits (102), Expect = 0.002
Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 23/172 (13%)
Frame = -2
Query: 598 APANARSRRP--PRGRSSSR*ASK-PQQSAHPRRTSAAAREPARASSWHRRCYAASVPQP 428
AP ++ RRP PR R ++ P+ PRR +P + RR + + QP
Sbjct: 188 APHHSPRRRPGSPRKRRERHPTARHPKPGRGPRRPQGTRHQPEQRPRTPRRRWRPN--QP 245
Query: 427 RPRQTWTRPP--QRPG--RRASAAPR-------A*WCPCAPCQRPHRPR*GTDVQ*RCHS 281
+ RPP QRPG RR + A R PC C++ HRPR R H
Sbjct: 246 ARPASRPRPPSRQRPGQLRRTARASRHRPMPHPPELLPCRRCRQLHRPR------TRRHR 299
Query: 280 *CSPSLAP---------PYHTWSAPVCAALRPFLRFPSTGFQAAPLKAPCRW 152
SP+ P P H W P + P P+ + P + P RW
Sbjct: 300 HRSPTHHPGLRPHPPRRPPHCWETPRLSHRHP----PADPPPSRPWRRPSRW 347
Score = 36.2 bits (82), Expect = 0.39
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Frame = -2
Query: 577 RRPPRGRSSSR*ASKPQQSAHPRRTSAAAREPARASSWHRRCYAASVPQP-----RPRQT 413
R PR R + +P A P + R P R A P+P RP+ T
Sbjct: 166 RPSPRDRHPAHRNRRPTPQAEPAPHHSPRRRPGSPRKRRERHPTARHPKPGRGPRRPQGT 225
Query: 412 WTRPPQRPGRRASAAPRA*WCPCAPCQRPHRPR 314
+P QRP PR W P P + RPR
Sbjct: 226 RHQPEQRP-----RTPRRRWRPNQPARPASRPR 253
>sp|P08563|POLS_RUBVM Structural polyprotein [Contains: Nucleocapsid protein C; Membrane
glycoprotein E2; Membrane glycoprotein E1]
gi|74522|pir||GNWVR3 structural polyprotein - rubella
virus (strain M33) gi|62094|emb|CAA28880.1| 110 kd
polyprotein precursor [Rubella virus]
Length = 992
Score = 42.4 bits (98), Expect = 0.005
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = -2
Query: 562 GRSSSR*ASKPQQSAH---PRRTSAAARE---PARASSWHRRCYAASVPQPRPRQTWTRP 401
G S SR P+ + P T A E P R +W R+ ++ + P P RQ
Sbjct: 30 GASQSRRPRPPRHARLQHLPEMTPAVTPEGPAPPRTGAWQRKDWSRAPPPPEERQE---- 85
Query: 400 PQRPGRRASAAPRA*WCPCAPCQRPHRPR*GTDVQ*RCHS*CSPSLAPPYHTWSAPVCAA 221
R + AP+ AP Q+P PR T R S P L PP + + A V
Sbjct: 86 ----SRSQTPAPKP---SRAPPQQPQPPRMQTG---RGGSAPRPELGPPTNPFQAAVARG 135
Query: 220 LRPFLRFPST 191
LRP L P T
Sbjct: 136 LRPPLHDPDT 145
>sp|P19725|POLS_RUBVR Structural polyprotein [Contains: Nucleocapsid protein C; Membrane
glycoprotein E2; Membrane glycoprotein E1]
gi|74520|pir||GNWVRA structural polyprotein - rubella
virus (strain RA27/3 vaccine) gi|61916|emb|CAA33016.1|
unnamed protein product [Rubella virus]
Length = 1063
Score = 41.6 bits (96), Expect = 0.009
Identities = 44/142 (30%), Positives = 54/142 (37%), Gaps = 1/142 (0%)
Frame = -2
Query: 613 RA*RTAPAN-ARSRRPPRGRSSSR*ASKPQQSAHPRRTSAAAREPARASSWHRRCYAASV 437
RA TA A+ +R RPPR R SS + + R R + W R A
Sbjct: 24 RAGLTAGASQSRRPRPPRQRDSSTTGDDSGRDSGGPRRPRGNRGRGQRRDWSR---APPP 80
Query: 436 PQPRPRQTWTRPPQRPGRRASAAPRA*WCPCAPCQRPHRPR*GTDVQ*RCHS*CSPSLAP 257
P+ R P +P R AP Q+P PR T R S P L P
Sbjct: 81 PEERQESRSQTPAPKPSR-------------APPQQPQPPRMQTG---RGGSAPRPELGP 124
Query: 256 PYHTWSAPVCAALRPFLRFPST 191
P + + A V LRP L P T
Sbjct: 125 PTNPFQAAVARGLRPPLHDPDT 146
>sp|P21480|POLS_RUBVH Structural polyprotein [Contains: Nucleocapsid protein C; Membrane
glycoprotein E2; Membrane glycoprotein E1]
gi|74521|pir||GNWV77 structural polyprotein - rubella
virus (strain HPV77) gi|333975|gb|AAA47421.1|
polyprotein precursor
Length = 1063
Score = 41.2 bits (95), Expect = 0.012
Identities = 39/134 (29%), Positives = 49/134 (36%)
Frame = -2
Query: 592 ANARSRRPPRGRSSSR*ASKPQQSAHPRRTSAAAREPARASSWHRRCYAASVPQPRPRQT 413
+ +R RPPR R SS + + R R + W R A P+ R
Sbjct: 32 SQSRRPRPPRQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSR---APPPPEERQESR 88
Query: 412 WTRPPQRPGRRASAAPRA*WCPCAPCQRPHRPR*GTDVQ*RCHS*CSPSLAPPYHTWSAP 233
P +P R AP Q+P PR T R S P L PP + + A
Sbjct: 89 SQTPAPKPSR-------------APPQQPQPPRMQTG---RGGSAPRPELGPPTNPFQAA 132
Query: 232 VCAALRPFLRFPST 191
V LRP L P T
Sbjct: 133 VARGLRPPLHDPDT 146
