KCC003431A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003431A_C01 KCC003431A_c01
GGAGACACAGCTGCAGCGGAGGACACAGCGGCAGGGAGCCAGCAGCGCGGACAGCCCGGG
CTGAGCCGAGGGTCTCCTCCCCCACATCTCAGCTCCAGCCGCTCCACATCATGCCAGGCG
CCGCCACAGCACCCCCATCCACCCCGCAGCACTCCATACAATGGCTGTCGCACGGGATGG
TGGAAACAACCCCAACCCCCACGCCATCTCACCTGCCGTGCGGCCACTAACCCTTGCACC
GCTTCCGCGCCCACACCCGGACCCTCAATCGCACCCGCACCCTCAACCGCACCCTCACCC
TCATCCGCACCCGCGCAGGAGGGCCACTGCAAGCCCGGCGAGGTGCTGTTCGGCACTGAC
AGCCACACCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003431A_C01 KCC003431A_c01
         (372 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH18929.1|AAH18929 Similar to T-cell death associated gene [...    62  3e-09
ref|NP_031376.1| pleckstrin homology-like domain, family A, memb...    62  3e-09
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g...    60  8e-09
gb|AAH42775.1| Unknown (protein for IMAGE:4987644) [Mus musculus...    59  2e-08
ref|XP_284044.1| hypothetical protein XP_284044 [Mus musculus]         58  4e-08

>gb|AAH18929.1|AAH18929 Similar to T-cell death associated gene [Homo sapiens]
          Length = 259

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 24/45 (53%), Positives = 27/45 (59%)
 Frame = +2

Query: 185 NNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRR 319
           + P P    P  +P  L P P PHP P SHPH  PHPHPHPHP +
Sbjct: 191 SQPQPQP-QPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQ 234

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = +2

Query: 188 NPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASPA 340
           +P+PH+  P   P    P P PHP    HPHPQPH  PH H   R+T++ A
Sbjct: 213 HPHPHS-HPHSHP---HPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA 259

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 11/44 (25%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQ-----------PHPHPHPHPRRRATASP 337
           P P+P P PQS P PQ           P+PHPHPHP     + P
Sbjct: 181 PQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHP 224

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 19/52 (36%), Positives = 21/52 (39%), Gaps = 17/52 (32%)
 Frame = +2

Query: 233 LAPLPRPHPDPQSHP-----------------HPQPHPHPHPHPRRRATASP 337
           L P P+P P PQ  P                 HP PHPHPHPH    +   P
Sbjct: 175 LQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHP 226

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           P  +P P PQ  P PQP P P P P+ +    P
Sbjct: 165 PPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQP 197

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           P P+P   PQ  P PQP P P   P+ +    P
Sbjct: 169 PQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKP 201

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = +2

Query: 248 RPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           +P   PQ  P  QP P P P P+ +  + P
Sbjct: 164 QPPSQPQPQPQLQPQPQPQPQPQPQPQSQP 193

>ref|NP_031376.1| pleckstrin homology-like domain, family A, member 1; PQ-rich
           protein [Homo sapiens] gi|2135950|pir||S58222 PQ-rich
           protein - human gi|929660|emb|CAA90576.1| PQ-rich
           protein [Homo sapiens]
           gi|7578877|gb|AAF64165.1|AF239986_1 apoptosis-associated
           nuclear protein [Homo sapiens]
          Length = 400

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 24/45 (53%), Positives = 27/45 (59%)
 Frame = +2

Query: 185 NNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRR 319
           + P P    P  +P  L P P PHP P SHPH  PHPHPHPHP +
Sbjct: 332 SQPQPQP-QPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQ 375

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = +2

Query: 188 NPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASPA 340
           +P+PH+  P   P    P P PHP    HPHPQPH  PH H   R+T++ A
Sbjct: 354 HPHPHS-HPHSHP---HPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA 400

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 11/44 (25%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQ-----------PHPHPHPHPRRRATASP 337
           P P+P P PQS P PQ           P+PHPHPHP     + P
Sbjct: 322 PQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHP 365

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 19/52 (36%), Positives = 21/52 (39%), Gaps = 17/52 (32%)
 Frame = +2

Query: 233 LAPLPRPHPDPQSHP-----------------HPQPHPHPHPHPRRRATASP 337
           L P P+P P PQ  P                 HP PHPHPHPH    +   P
Sbjct: 316 LQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHP 367

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           P  +P P PQ  P PQP P P P P+ +    P
Sbjct: 306 PPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQP 338

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           P P+P   PQ  P PQP P P   P+ +    P
Sbjct: 310 PQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKP 342

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = +2

Query: 248 RPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           +P   PQ  P  QP P P P P+ +  + P
Sbjct: 305 QPPSQPQPQPQLQPQPQPQPQPQPQPQSQP 334

>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
           gi|28828387|gb|AAM09303.2| similar to Plasmodium
           lophurae. Histidine-rich glycoprotein precursor
           [Dictyostelium discoideum]
          Length = 233

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 31/82 (37%), Positives = 33/82 (39%)
 Frame = +2

Query: 104 PHHARRRHSTPIHPAALHTMAVARDGGNNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHP 283
           PHH    H  P     LH          NP+PH            P P PHP P  HP+P
Sbjct: 155 PHHHPHPHPHPHPHPHLHP---------NPHPHP----------HPHPHPHPHPHHHPNP 195

Query: 284 QPHPHPHPHPRRRATASPARCC 349
            PHPHPHPHP        A  C
Sbjct: 196 NPHPHPHPHPHHHHHHQEASEC 217

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 27/77 (35%), Positives = 30/77 (38%)
 Frame = +2

Query: 107 HHARRRHSTPIHPAALHTMAVARDGGNNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQ 286
           HH    H    HP              +P+PH            P P PH  P  HPHP 
Sbjct: 147 HHHHHHHHPHHHP--------------HPHPH------------PHPHPHLHPNPHPHPH 180

Query: 287 PHPHPHPHPRRRATASP 337
           PHPHPHPHP      +P
Sbjct: 181 PHPHPHPHPHHHPNPNP 197

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 254 HPDPQSHPHPQPHPHPHPHP 313
           H     H HP  HPHPHPHP
Sbjct: 146 HHHHHHHHHPHHHPHPHPHP 165

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 254 HPDPQSHPHPQPHPHPHPHP 313
           H     H H  PH HPHPHP
Sbjct: 144 HHHHHHHHHHHPHHHPHPHP 163

>gb|AAH42775.1| Unknown (protein for IMAGE:4987644) [Mus musculus]
           gi|28385951|gb|AAH46539.1| Unknown (protein for
           IMAGE:5066770) [Mus musculus]
          Length = 214

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 21/39 (53%), Positives = 27/39 (68%)
 Frame = +2

Query: 221 RPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           RPL   P P P+P+P ++PHP PHP+PHPHP     A+P
Sbjct: 79  RPLNRLPNPNPNPNPNANPHPHPHPNPHPHPNPHPNANP 117

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 23/59 (38%), Positives = 29/59 (48%)
 Frame = +2

Query: 188 NPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASPARCCSALTA 364
           NPNP+A             P PHP P  HPHP PHP+ +PHP R    + +   S+  A
Sbjct: 90  NPNPNAN------------PHPHPHPNPHPHPNPHPNANPHPPRPTCEAASSALSSARA 136

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +2

Query: 128 STPIHPAALHTMAVARDGGNNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHP 307
           +T + P    +  + R    NPNP+   P   P    P P P+P P  +PHP  +PHP P
Sbjct: 68  TTDLWPRLASSRPLNRLPNPNPNPN---PNANP---HPHPHPNPHPHPNPHPNANPHP-P 120

Query: 308 HPRRRATAS 334
            P   A +S
Sbjct: 121 RPTCEAASS 129

>ref|XP_284044.1| hypothetical protein XP_284044 [Mus musculus]
          Length = 205

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 21/39 (53%), Positives = 26/39 (65%)
 Frame = +2

Query: 221 RPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASP 337
           RPL   P P P+P+P  HPHP PHP+P+PHP     A+P
Sbjct: 70  RPLNRLPNPHPNPNPNPHPHPHPHPNPNPHPHPHPNANP 108

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 26/68 (38%), Positives = 32/68 (46%)
 Frame = +2

Query: 161 MAVARDGGNNPNPHAISPAVRPLTLAPLPRPHPDPQSHPHPQPHPHPHPHPRRRATASPA 340
           +A +R     PNPH            P P P+P P  HPHP P+PHPHPHP         
Sbjct: 66  LASSRPLNRLPNPH------------PNPNPNPHPHPHPHPNPNPHPHPHPNANPHPPRP 113

Query: 341 RCCSALTA 364
            C +A +A
Sbjct: 114 TCEAASSA 121



EST assemble image


clone accession position
1 MXL013a06_r BP093745 1 264
2 MXL095b11_r BP098547 1 372




Chlamydomonas reinhardtii
Kazusa DNA Research Institute