KCC003430A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003430A_C01 KCC003430A_c01
CGCCACCAGCGCCGCCGGCCGCCGCCTGCTGCAGACGGCGCCCGCCCCGTTCACCCAGCT
GCAGGCGCAGGCCACGGCCCTGGCCGCCGCCGCCGCCGGCAGCAACGCGCTGGTGGCTGC
CCAGCAGGCCAGGCTGATCACCGCCATCAACGCCGGCACCAGCATCTCGGCGGCCGAACT
GACCAACATCATCAATGAGGCCAGCAAGGTCATTGTCGCGCAGTCGACCGTCATTGCCAC
CGCCGCCACCGGCCTAGGCAGCGGCGCCATCAGCCCCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003430A_C01 KCC003430A_c01
         (280 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO25118.1| flagella membrane glycoprotein 1B [Chlamydomonas ...   168  2e-41
gb|AAO25117.1| flagella membrane glycoprotein 1A [Chlamydomonas ...   161  3e-39
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    62  2e-09
gb|AAQ73927.1| erythrocyte membrane protein 1 [Plasmodium falcip...    58  3e-08
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva...    57  7e-08

>gb|AAO25118.1| flagella membrane glycoprotein 1B [Chlamydomonas reinhardtii]
          Length = 2213

 Score =  168 bits (426), Expect = 2e-41
 Identities = 93/93 (100%), Positives = 93/93 (100%)
 Frame = +2

Query: 2    ATSAAGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAEL 181
            ATSAAGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAEL
Sbjct: 2035 ATSAAGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAEL 2094

Query: 182  TNIINEASKVIVAQSTVIATAATGLGSGAISPA 280
            TNIINEASKVIVAQSTVIATAATGLGSGAISPA
Sbjct: 2095 TNIINEASKVIVAQSTVIATAATGLGSGAISPA 2127

>gb|AAO25117.1| flagella membrane glycoprotein 1A [Chlamydomonas reinhardtii]
          Length = 3873

 Score =  161 bits (407), Expect = 3e-39
 Identities = 88/91 (96%), Positives = 91/91 (99%)
 Frame = +2

Query: 8    SAAGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAELTN 187
            ++AGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAELTN
Sbjct: 3697 TSAGRRLLQTAPAPFTQLQAQATALAAAAAGSNALVAAQQARLITAINAGTSISAAELTN 3756

Query: 188  IINEASKVIVAQSTVIATAATGLGSGAISPA 280
            IINEASKVIVAQSTVIATAA+GLGSGAISPA
Sbjct: 3757 IINEASKVIVAQSTVIATAASGLGSGAISPA 3787

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 37/90 (41%), Positives = 46/90 (51%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN* 182
           PPAPP AA  +  PP  P    RP P PPPPP A      +RP  +P +TP P +  P  
Sbjct: 150 PPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGP---AARPTPAPTATPTPVAPPPAA 206

Query: 183 PTSSMRPARSLSRSRPSLPPPPPA*AAAPS 272
           PT+  RP      + P+ P P PA  A P+
Sbjct: 207 PTA--RPGSPAPAATPA-PTPTPAPTATPA 233

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 42/97 (43%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +3

Query: 3   PPAPPAAACCRRR-----PPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPAS 167
           P APP AA   R      PP  P+ R  P P PPPPPAA     P +P  SPP   AP  
Sbjct: 80  PAAPPPAAAPPRPAAPPPPPPPPAARPAPPP-PPPPPAA-----PKQP--SPPPAAAPQQ 131

Query: 168 RRPN*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
             P  P     PA   +R  P+ P PPPA AA   AP
Sbjct: 132 HAPTPPP----PAPPAARPAPTPPAPPPA-AAPQHAP 163

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 36/93 (38%), Positives = 44/93 (46%), Gaps = 1/93 (1%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN* 182
           PP PPAA      PPR  +    P P PPPP A        RP   PP  P  A ++P+ 
Sbjct: 76  PPHPPAAPPPAAAPPRPAA----PPPPPPPPAA--------RPAPPPPPPPPAAPKQPSP 123

Query: 183 PTSSMRPARSLSRSRPSLPPP-PPA*AAAPSAP 278
           P     PA +  +  P+ PPP PPA   AP+ P
Sbjct: 124 P-----PAAAPQQHAPTPPPPAPPAARPAPTPP 151

 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 39/105 (37%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRP-----------WPPP--PPAATRWWLPSRPG*SP 143
           PP PPAA      PP  P+  ++P P            PPP  PPAA       RP  +P
Sbjct: 98  PPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAA-------RPAPTP 150

Query: 144 PSTPAPASRRPN*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
           P+ P PA+   + P     PA   +R  P+ PPPPPA  AA   P
Sbjct: 151 PA-PPPAAAPQHAPPPPPPPA---ARPTPTPPPPPPAGPAARPTP 191

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 38/94 (40%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +3

Query: 3   PP--APPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRP 176
           PP  APPAA     RP   P     P P   PPPAA     P RP   PP  P PA+R  
Sbjct: 55  PPGAAPPAAPA---RPAAPPPAAAPPHPPAAPPPAAA----PPRPAAPPPPPPPPAAR-- 105

Query: 177 N*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
                   PA       P  PPPPPA    PS P
Sbjct: 106 --------PA-------PPPPPPPPAAPKQPSPP 124

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +3

Query: 6   PAPPAAACCRRR-----PPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASR 170
           P+PP AA  ++      PP  P+ R  P P  PPP AA +   P  P  +   TP P   
Sbjct: 121 PSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPP 180

Query: 171 RPN*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
            P  P +  RP  + + +   + PPP A  A P +P
Sbjct: 181 PPAGPAA--RPTPAPTATPTPVAPPPAAPTARPGSP 214

 Score = 38.9 bits (89), Expect = 0.021
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATR--------WWLPSRPG*SPPSTPA 158
           P APP AA   R  P SP+    P P P P P AT            P  P    P  P 
Sbjct: 199 PVAPPPAAPTAR--PGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGAPPAGRPGAPP 256

Query: 159 PASRRPN*PTSSMRPARSLSRSRPSLPPPPPA*AAAPS 272
           P  R  + P +   PA   + + P+  P P   A  PS
Sbjct: 257 PGVRPGSPPAAGSPPAPGATPA-PTTTPAPGGTATPPS 293

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 29/91 (31%), Positives = 32/91 (34%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN* 182
           P A PA       PP        P   P  PPAA     P  PG +P  T  PA      
Sbjct: 234 PTATPAPGSTPGAPPAGRPGAPPPGVRPGSPPAAGS---PPAPGATPAPTTTPAPGGTAT 290

Query: 183 PTSSMRPARSLSRSRPSLPPPPPA*AAAPSA 275
           P S         R  P+  P P A   AP+A
Sbjct: 291 PPS--------GRPGPASTPAPGAATPAPTA 313

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 22/69 (31%), Positives = 26/69 (36%)
 Frame = +3

Query: 72  PRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN*PTSSMRPARSLSRSRPSLPPPPP 251
           P P   P P       P RPG  P  TP P    P        PA + +   P+ PP   
Sbjct: 309 PAPTATPAPGGALTPPPGRPGAGP--TPGPQGGTP--------PAGAPAAGTPAAPPQAG 358

Query: 252 A*AAAPSAP 278
              A P+AP
Sbjct: 359 GLPARPAAP 367

>gb|AAQ73927.1| erythrocyte membrane protein 1 [Plasmodium falciparum]
          Length = 2322

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 38/94 (40%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +3

Query: 6    PAPPAAACCRRRPPRSPSCRRRPRPWPPPP---PAATRWWLPSRPG*SPPSTPAPASRRP 176
            P    A C  ++ P+ P  R  P   PPPP   P  +R   PSRP   PPS P P SR P
Sbjct: 1647 PEEVKAKCTCQKAPQPPPSRPPPPSRPPPPSRPPPPSRPPPPSRP--PPPSRPPPPSRPP 1704

Query: 177  N*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
              P+    P+R    SRP  PPPPP     P+ P
Sbjct: 1705 P-PSRPPPPSRPPPPSRPPPPPPPPPAPRPPAEP 1737

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 34/93 (36%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 6    PAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN*P 185
            P PP+    R  PP  P    RP P PPPPPA      P+R   S P   A + R  + P
Sbjct: 1703 PPPPS----RPPPPSRPPPPSRPPPPPPPPPAPRPPAEPARD--SGPDHRARSERGEDGP 1756

Query: 186  TSSMR--PARSLSRSRPSLPPPPPA*AAAPSAP 278
                R  P  +L RS  ++P P PA    P  P
Sbjct: 1757 LPGPRSPPKENLGRS-DTVPSPRPAPPGRPQQP 1788

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 37/90 (41%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +3

Query: 6    PAPPAAACCRRRPP---RSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRP 176
            P PP+      RPP   R P   R P P  PPPP+  R   PSRP   PP  P PA R P
Sbjct: 1679 PPPPSRPPPPSRPPPPSRPPPPSRPPPPSRPPPPS--RPPPPSRPPPPPP--PPPAPRPP 1734

Query: 177  N*PTSSMRP---ARSLSRSRPSLPPP--PP 251
              P     P   ARS       LP P  PP
Sbjct: 1735 AEPARDSGPDHRARSERGEDGPLPGPRSPP 1764

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 26/79 (32%), Positives = 28/79 (34%)
 Frame = +3

Query: 3    PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN* 182
            PPA PA         RS      P P P  PP         R    P   PAP   RP  
Sbjct: 1733 PPAEPARDSGPDHRARSERGEDGPLPGPRSPPKENL----GRSDTVPSPRPAPPG-RPQQ 1787

Query: 183  PTSSMRPARSLSRSRPSLP 239
            P  +     SL+R  P LP
Sbjct: 1788 PPKAQPTRESLARILPPLP 1806

>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 57.0 bits (136), Expect = 7e-08
 Identities = 37/95 (38%), Positives = 43/95 (44%), Gaps = 3/95 (3%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASR---R 173
           PP PP A       P SP     P P PP PPA +    PS P    PS+P PA+    +
Sbjct: 94  PPQPPPATSPAPTKPSSP-----PAPKPPSPPAPSPSTTPSSPPAPKPSSPPPAATPTTK 148

Query: 174 PN*PTSSMRPARSLSRSRPSLPPPPPA*AAAPSAP 278
           P+ P SS    R      P  PPPPP  AA   +P
Sbjct: 149 PSPPPSSPPAPRPSPPLPPRTPPPPPPAAAPKPSP 183

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 34/84 (40%), Positives = 43/84 (50%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN* 182
           PP+PPA +     P  +PS    P+P   PPPAAT    PS P  SPP+ P P+   P  
Sbjct: 116 PPSPPAPS-----PSTTPSSPPAPKP-SSPPPAATPTTKPSPPPSSPPA-PRPS---PPL 165

Query: 183 PTSSMRPARSLSRSRPSLPPPPPA 254
           P  +  P    +  +PS P PPPA
Sbjct: 166 PPRTPPPPPPAAAPKPS-PSPPPA 188

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
 Frame = +3

Query: 3   PPAPPAAACCRRRP-------PRSPSCRRRPRPWPPPP---PAATRWWLPSRPG*SPPST 152
           PP P   A     P       PR+P+    PRP  PPP   PA T+   P  P   PPS 
Sbjct: 63  PPTPATPAKAASPPATNSSSSPRTPAAPA-PRPPQPPPATSPAPTKPSSPPAP--KPPSP 119

Query: 153 PAPA----SRRPN*PTSSMRPARSLSRSRPSLPP-PPPA*AAAPSAP 278
           PAP+       P  P  S  P  +   ++PS PP  PPA   +P  P
Sbjct: 120 PAPSPSTTPSSPPAPKPSSPPPAATPTTKPSPPPSSPPAPRPSPPLP 166

 Score = 40.0 bits (92), Expect = 0.009
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPP--------PPPAATRWWLPSRPG*SPPSTPA 158
           P +PP AA    +P   PS    PRP PP        PPPAA       +P  SPP  P 
Sbjct: 136 PSSPPPAATPTTKPSPPPSSPPAPRPSPPLPPRTPPPPPPAAA-----PKPSPSPPPAPT 190

Query: 159 PASRRPN*PTSS 194
            ++   + P++S
Sbjct: 191 NSTTNSSSPSTS 202

 Score = 38.5 bits (88), Expect = 0.027
 Identities = 23/59 (38%), Positives = 25/59 (41%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPPPPAATRWWLPSRPG*SPPSTPAPASRRPN 179
           PPAP  +     R P  P     P+P P PPPA T     S    S PST  P    PN
Sbjct: 156 PPAPRPSPPLPPRTPPPPPPAAAPKPSPSPPPAPTN----STTNSSSPSTSTPVQLSPN 210

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
 Frame = +3

Query: 78  PWPPPPPAATRWWLPSR-PG*SPPSTPAPASRRPN*P-TSSMRPARSLSRSRPSLPPPPP 251
           P   P PAA+     +R P    P TPA  ++  + P T+S    R+ +   P  P PPP
Sbjct: 40  PSSSPAPAASSATPAARAPSQRTPPTPATPAKAASPPATNSSSSPRTPAAPAPRPPQPPP 99

Query: 252 A*AAAPSAP 278
           A + AP+ P
Sbjct: 100 ATSPAPTKP 108

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 29/81 (35%), Positives = 36/81 (43%), Gaps = 5/81 (6%)
 Frame = +3

Query: 3   PPAPPAAACCRRRPPRSPSCRRRPRPWPPP-PPAATRWWLPSRPG*SPPSTPA----PAS 167
           PPAP  ++     PP  P+     +P PPP  P A R   P  P   PP  PA    P+ 
Sbjct: 131 PPAPKPSS-----PP--PAATPTTKPSPPPSSPPAPRPSPPLPPRTPPPPPPAAAPKPSP 183

Query: 168 RRPN*PTSSMRPARSLSRSRP 230
             P  PT+S   + S S S P
Sbjct: 184 SPPPAPTNSTTNSSSPSTSTP 204



EST assemble image


clone accession position
1 MXL012h09_r BP093741 1 280
2 MXL013b08_r BP093754 1 197




Chlamydomonas reinhardtii
Kazusa DNA Research Institute