KCC003425A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003425A_C01 KCC003425A_c01
gtcaatattaggcagCTGTAACGTGTAGGCTTTGTTCTAGTGAAGTGCTCCGGTTCGGAA
AGGTCGACTTGTGTTCGCGCCTGCATAGCCCTCCCCAGAAATGGGCGGTCTCCAGGAGTT
CTACACGGTTCCTGATATTGTAAAGCAATGGGCGCATTACTTCTACCGACACATCAGGGA
ACGCAACATTCCGGAGATTCAGTCGATGTATGAGATCTCCTTCCTGAAGCTCAGCGACCG
CTACTACAAGGCCTCGCCATGGCCAGAGGTGCAGCACATCGCGGAGGTGGTGGACCACGA
CCACGTGTTCTGTCTGCTGTACAAGGAGATGTACTTCCGCCACCTGTACGCGCGCTGCCA
GCCCACCCTGCGCGACCGCTGCGAGTCTTGGGACAACTACATCGACCTGTTTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003425A_C01 KCC003425A_c01
         (413 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN31908.1| unknown protein [Arabidopsis thaliana]                 124  2e-28
ref|NP_680222.1| expressed protein [Arabidopsis thaliana] gi|223...   124  2e-28
dbj|BAA94770.1| unnamed protein product [Oryza sativa (japonica ...   102  1e-21
gb|AAH54626.1| Unknown (protein for MGC:64147) [Danio rerio]           97  4e-20
ref|NP_648553.1| CG5642-PA [Drosophila melanogaster] gi|7294613|...    91  4e-18

>gb|AAN31908.1| unknown protein [Arabidopsis thaliana]
          Length = 514

 Score =  124 bits (312), Expect = 2e-28
 Identities = 55/95 (57%), Positives = 71/95 (73%)
 Frame = +2

Query: 128 VPDIVKQWAHYFYRHIRERNIPEIQSMYEISFLKLSDRYYKASPWPEVQHIAEVVDHDHV 307
           VPD VK +  + YRHIR++N+ EI  M E SF  +S+R +K +PWP V+ IA  VD+DHV
Sbjct: 23  VPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISERLFKDTPWPSVEAIAPYVDNDHV 82

Query: 308 FCLLYKEMYFRHLYARCQPTLRDRCESWDNYIDLF 412
           FCLLY+EM+FRHLYAR  PTL+ R +S+DNY  LF
Sbjct: 83  FCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLF 117

>ref|NP_680222.1| expressed protein [Arabidopsis thaliana]
           gi|22327070|ref|NP_680223.1| expressed protein
           [Arabidopsis thaliana]
          Length = 514

 Score =  124 bits (312), Expect = 2e-28
 Identities = 55/95 (57%), Positives = 71/95 (73%)
 Frame = +2

Query: 128 VPDIVKQWAHYFYRHIRERNIPEIQSMYEISFLKLSDRYYKASPWPEVQHIAEVVDHDHV 307
           VPD VK +  + YRHIR++N+ EI  M E SF  +S+R +K +PWP V+ IA  VD+DHV
Sbjct: 23  VPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISERLFKDTPWPSVEAIAPYVDNDHV 82

Query: 308 FCLLYKEMYFRHLYARCQPTLRDRCESWDNYIDLF 412
           FCLLY+EM+FRHLYAR  PTL+ R +S+DNY  LF
Sbjct: 83  FCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLF 117

>dbj|BAA94770.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|17385748|dbj|BAB78688.1| Homo sapiens HSPC025-like
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 565

 Score =  102 bits (254), Expect = 1e-21
 Identities = 47/103 (45%), Positives = 64/103 (61%), Gaps = 8/103 (7%)
 Frame = +2

Query: 128 VPDIVKQWAHYFYRHIRERNIPEIQSMYEISFLKLSDRYYKASPWPEVQHIAEVVDHDHV 307
           VPD VK +  + YRH+R++N+ EI  MYE  F +LSDR ++ +PWP  + ++   D DHV
Sbjct: 22  VPDSVKTFVAHMYRHVRDKNVYEIHQMYEGGFQRLSDRLFRDAPWPAAEAVSPYCDGDHV 81

Query: 308 FCLLYKEMYFRHLYARCQP--------TLRDRCESWDNYIDLF 412
           F LLY+E+++RH YAR           T   R ESW NY DLF
Sbjct: 82  FLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESWANYCDLF 124

>gb|AAH54626.1| Unknown (protein for MGC:64147) [Danio rerio]
          Length = 576

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 22/122 (18%)
 Frame = +2

Query: 113 QEFYTVPDIVKQWAHYFYRHIR--------------------ERNIPEIQSMYEISFLKL 232
           Q ++ +P+++K +  YF++ I                     E+ I EIQ +YE S+ KL
Sbjct: 42  QTYHVIPEVIKNFLQYFHKTISDLIDQKVYELQANRVSSESIEQKIYEIQDVYENSWNKL 101

Query: 233 SDRYYKASPWPEVQHIAEVVDHDHVFCLLYKEMYFRHLYARCQ--PTLRDRCESWDNYID 406
           +DR++K SPWPE + IA +V +D VF +LYKE+Y+RH+YA+    PTL  R ES+ NY +
Sbjct: 102 TDRFFKTSPWPEAEAIASLVGNDAVFLILYKELYYRHIYAKVSGGPTLDQRFESYYNYCN 161

Query: 407 LF 412
           LF
Sbjct: 162 LF 163

>ref|NP_648553.1| CG5642-PA [Drosophila melanogaster] gi|7294613|gb|AAF49952.1|
           CG5642-PA [Drosophila melanogaster]
           gi|19528461|gb|AAL90345.1| RE21692p [Drosophila
           melanogaster]
          Length = 539

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
 Frame = +2

Query: 89  PSPEMGGLQEFYT--VPDIVKQWAHYFYRHIRERNIPEIQSMYEISFLKLSDRYYKASPW 262
           P  +M   + +Y   +PD VK +   F + I+E N+ +IQ+MYE +F ++SD ++  + W
Sbjct: 23  PQLDMEYERNYYAARMPDNVKYFLINFCQAIKEGNLYDIQNMYENTFPQISDHHFDKTAW 82

Query: 263 PEVQHIAEVVDHDHVFCLLYKEMYFRHLYARCQ--PTLRDRCESWDNYIDLF 412
           PE Q +A +VD+D VF +LYKE+Y+RH++AR    P L  R  S+ NY D F
Sbjct: 83  PEEQEVAAIVDNDKVFLILYKELYYRHIHARIPGGPKLEQRINSFFNYCDFF 134



EST assemble image


clone accession position
1 MXL065f07_r BP096836 1 396
2 MXL074h07_r BP097390 16 395
3 MXL011h07_r BP093675 42 413
4 MXL011e06_r BP093652 71 298




Chlamydomonas reinhardtii
Kazusa DNA Research Institute