KCC003421A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003421A_C01 KCC003421A_c01
GTCCATTAGCTCACTTGTCTAGCTTGTCATCCTTTAGTGGTAGGTGCAAGCCCACCTCGA
CCATCAGCACCATGAACGCCACGATGCAGCGCAGCGCCGTTGCCGGCCGGACCAGCGGCA
AGGTGGCCACCACGGCCCGTGCCTCGTCCCTGGCTCGCCCTCGCCTGCCAATTGCTGGCC
GCGTCGCTCGCCGGTCCGCTGTGACTGTTCGGGCGGTCGCTGAGCCCGTCGTTGTCGACA
AAGCAGTCGAGGCCACGGCGAAGCCTGTGCCCAGCGGTGGCGACCCCTGGGAGGACGAGA
AGTGGACCAAGTACAAGTGGACCGTGTACCGCGGCGTGGCGTACGACCTGACGCCCTACC
TGGACCGCCACCCCGGAGGGCGCTGGCTGCTGAACCTGGCCATCGGCCGCGACGCCACCG
CGCTGTTCGAGTCCTACCACCTGCGCCCCGAGGTTTGCGCCTCCATGCTGAAGCGGTTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003421A_C01 KCC003421A_c01
         (480 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD53323.1| delta 5 fatty acid desaturase [Phytophthora mega...    56  3e-07
ref|NP_335866.1| desaturase-related protein [Mycobacterium tuber...    56  3e-07
ref|NP_215887.1| hypothetical protein Rv1371 [Mycobacterium tube...    56  3e-07
dbj|BAA81814.1| fatty acid desaturase [Dictyostelium discoideum]       53  2e-06
dbj|BAB09523.1| gene_id:MTH16.10~unknown protein [Arabidopsis th...    52  3e-06

>emb|CAD53323.1| delta 5 fatty acid desaturase [Phytophthora megasperma]
          Length = 477

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = +3

Query: 288 WED---EKWTKYKWTVYRGVAYDLTPYLDRHPGGRWLLNLAIGRDATALFESYH 440
           W+D       K  W   RGV YD+T + DRHPGGR L+ L  GR+ T  F+SYH
Sbjct: 32  WQDVAKHNTAKSAWVTIRGVVYDVTEWADRHPGGRELVLLHSGRECTDTFDSYH 85

>ref|NP_335866.1| desaturase-related protein [Mycobacterium tuberculosis CDC1551]
           gi|13881026|gb|AAK45680.1| desaturase-related protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 541

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +3

Query: 261 KPVPSGGDPWEDEKWTKYKWTVYRGVAYDLTPYLDRHPGGRWLLNLAIGRDATALFESYH 440
           +P P  G P   + W      VY G AYDL+ ++ +HPGG + +     RD TA+ +SYH
Sbjct: 68  RPAPPAGGPRLSDVW------VYNGRAYDLSEWISKHPGGAFFIGRTKNRDITAIVKSYH 121

Query: 441 LRPEVCASMLKR 476
             P +   +L+R
Sbjct: 122 RDPAIVERILQR 133

>ref|NP_215887.1| hypothetical protein Rv1371 [Mycobacterium tuberculosis H37Rv]
           gi|7476745|pir||H70957 probable heme binding protein
           Rv1371 [similarity] - Mycobacterium tuberculosis (strain
           H37RV) gi|1621253|emb|CAB02649.1| hypothetical protein
           Rv1371 [Mycobacterium tuberculosis H37Rv]
          Length = 489

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +3

Query: 261 KPVPSGGDPWEDEKWTKYKWTVYRGVAYDLTPYLDRHPGGRWLLNLAIGRDATALFESYH 440
           +P P  G P   + W      VY G AYDL+ ++ +HPGG + +     RD TA+ +SYH
Sbjct: 16  RPAPPAGGPRLSDVW------VYNGRAYDLSEWISKHPGGAFFIGRTKNRDITAIVKSYH 69

Query: 441 LRPEVCASMLKR 476
             P +   +L+R
Sbjct: 70  RDPAIVERILQR 81

>dbj|BAA81814.1| fatty acid desaturase [Dictyostelium discoideum]
          Length = 464

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 32/52 (61%)
 Frame = +3

Query: 318 WTVYRGVAYDLTPYLDRHPGGRWLLNLAIGRDATALFESYHLRPEVCASMLK 473
           W    G  YD+T ++  HPGG+ +L LA GRD T LFESYH   +   S+LK
Sbjct: 31  WVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILK 82

>dbj|BAB09523.1| gene_id:MTH16.10~unknown protein [Arabidopsis thaliana]
          Length = 275

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +3

Query: 318 WTVYRGVAYDLTPYLDRHPGGRWLLNLAIGRDATALFESYH 440
           WTV +G  Y+++PY++ HPGG  +L  A+GRD T LF  YH
Sbjct: 208 WTVLKGRVYNISPYMNFHPGGVDMLMKAVGRDGTLLFNKYH 248



EST assemble image


clone accession position
1 MXL009h02_r BP093541 1 388
2 MXL070a11_r BP097103 1 480
3 MXL011e10_r BP093655 10 448




Chlamydomonas reinhardtii
Kazusa DNA Research Institute