KCC003390A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003390A_C01 KCC003390A_c01
GTGCTTATGAATGACCCGGTCGTGATTCCGGGGGAGCGCGTTAGGATGCGAGCGATGTCT
AGCAGATGACTCATTCCTGCGATCGACTCAACCTGTTCGCGTGGGTATGGCGTGTGGCTG
TACTGTGGTTATGGTATGCGAGTGCACTGCTGACGTAGTAGCAGTGGGCGTACGAAAGAG
CAAGCGACTAGTAGGCACTTGGCGTAGTTCGAAAGTCGTGCGCTATGAGACGTGCGGTTG
TGATGCCGTGCGTATGCTGCTGGAGAGAGAGCAGGCTTTGTGTGAGCGGCAAGTAGGGAC
ATGCGATGGCATACCGAAAGCTGTGCAGGTTGCGAGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003390A_C01 KCC003390A_c01
         (339 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC34965.1| unnamed protein product [Mus musculus]                 37  0.072
gb|AAH36091.1| CDKL5 protein [Homo sapiens]                            36  0.12
ref|NP_003150.1| cyclin-dependent kinase-like 5; serine/threonin...    36  0.12
emb|CAE03637.1| OSJNBa0060N03.2 [Oryza sativa (japonica cultivar...    34  0.61
gb|AAG53080.1|AF263824_1 5'A2rel-related protein [Leishmania don...    33  1.4

>dbj|BAC34965.1| unnamed protein product [Mus musculus]
          Length = 783

 Score = 37.0 bits (84), Expect = 0.072
 Identities = 28/104 (26%), Positives = 42/104 (39%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 PSHVPTCRSHKACSLSSSIRTASQPHVS*RTTFELRQVPTSRLLFRTPTATTSAVHSHTI 130
           PS+    +SH A S S S+   S+       T   R  P+S L   +PT+ T   H+ T 
Sbjct: 480 PSYRTKAKSHGALSDSKSVSNLSEARAQITETNTSRYFPSSCLDLNSPTSPTPTRHTDTR 539

Query: 129 TTVQPHAIPTRT-G*VDRRNESSARHRSHPNALPRNHDRVIHKH 1
           T + P     R  G +D R  ++   ++        H    H H
Sbjct: 540 TLLSPSGRNNRNEGTLDSRRTTTRHSKTMEELKLPEHMDSSHSH 583

>gb|AAH36091.1| CDKL5 protein [Homo sapiens]
          Length = 831

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 28/104 (26%), Positives = 41/104 (38%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 PSHVPTCRSHKACSLSSSIRTASQPHVS*RTTFELRQVPTSRLLFRTPTATTSAVHSHTI 130
           PS+    +SH A S S S+   S+           R  P+S L   +PT+ T   HS T 
Sbjct: 480 PSYRTKAKSHGALSDSKSVSNLSEARAQIAEPSTSRYFPSSCLDLNSPTSPTPTRHSDTR 539

Query: 129 TTVQPHAIPTRT-G*VDRRNESSARHRSHPNALPRNHDRVIHKH 1
           T + P     R  G +D R  ++   ++        H    H H
Sbjct: 540 TLLSPSGRNNRNEGTLDSRRTTTRHSKTMEELKLPEHMDSSHSH 583

>ref|NP_003150.1| cyclin-dependent kinase-like 5; serine/threonine kinase 9 [Homo
           sapiens] gi|6175070|sp|O76039|STK9_HUMAN
           Serine/threonine protein kinase 9 (Cyclin-dependent
           kinase-like 5) gi|3559925|emb|CAA75342.1| STK9 protein
           [Homo sapiens] gi|30983553|gb|AAO64440.1|
           serine/threonine kinase 9 [Homo sapiens]
          Length = 1030

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 28/104 (26%), Positives = 41/104 (38%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 PSHVPTCRSHKACSLSSSIRTASQPHVS*RTTFELRQVPTSRLLFRTPTATTSAVHSHTI 130
           PS+    +SH A S S S+   S+           R  P+S L   +PT+ T   HS T 
Sbjct: 480 PSYRTKAKSHGALSDSKSVSNLSEARAQIAEPSTSRYFPSSCLDLNSPTSPTPTRHSDTR 539

Query: 129 TTVQPHAIPTRT-G*VDRRNESSARHRSHPNALPRNHDRVIHKH 1
           T + P     R  G +D R  ++   ++        H    H H
Sbjct: 540 TLLSPSGRNNRNEGTLDSRRTTTRHSKTMEELKLPEHMDSSHSH 583

>emb|CAE03637.1| OSJNBa0060N03.2 [Oryza sativa (japonica cultivar-group)]
          Length = 149

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 28/95 (29%), Positives = 38/95 (39%)
 Frame = -1

Query: 306 SHVPTCRSHKACSLSSSIRTASQPHVS*RTTFELRQVPTSRLLFRTPTATTSAVHSHTIT 127
           S +P  R HK  S    IRT+  P ++   T   ++ P  +   R   A   AVH+    
Sbjct: 10  SPIPASRQHKPSSCHFHIRTS--PPINNDKTHHRQKPPAEQEAGRQRAAAALAVHT---- 63

Query: 126 TVQPHAIPTRTG*VDRRNESSARHRSHPNALPRNH 22
             QP   P     + R  + S R R  P   P NH
Sbjct: 64  --QPSRRPAA---IRRGGDGSGRGRPDPARFPTNH 93

>gb|AAG53080.1|AF263824_1 5'A2rel-related protein [Leishmania donovani]
          Length = 1614

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 22/93 (23%), Positives = 38/93 (40%)
 Frame = -1

Query: 285  SHKACSLSSSIRTASQPHVS*RTTFELRQVPTSRLLFRTPTATTSAVHSHTITTVQPHAI 106
            +H    +++S R    PH            P+S ++ ++  A+ +A      TT+ P   
Sbjct: 1380 AHLHAEVATSARGGCLPHTRREQHSVTASAPSSPIVAQSAAASAAAPLGRMPTTLSPTTA 1439

Query: 105  PTRTG*VDRRNESSARHRSHPNALPRNHDRVIH 7
            P+        + +  RHRS P   P  +  VIH
Sbjct: 1440 PSSAPRASSADTAQGRHRSIP---PPEYHAVIH 1469



EST assemble image


clone accession position
1 MX055f04_r BP088257 1 262
2 MX055g09_r BP088266 1 339




Chlamydomonas reinhardtii
Kazusa DNA Research Institute