KCC003379A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003379A_C01 KCC003379A_c01
cacgCACACAGCGTTGCTAGCGGTCAACTAAGCGATCCACCGCACTTTATTATGACATTG
CCACGTGGGTTAGGGACTTCTTTTTGCATCCTGCAGGAATGAAATGCACTTGGCTCTGAG
CGCACTTTTGAGGAGTGTGCTGACGATCCACTTTGCCAAGGATCCAGGTGTGGGGATGGG
GTCTGACCGGCGTGAGTGTGTGGTTTTGGGTAAACTGGTGGGGATATGTAGATGGCAATG
GCGGCTGTGGTGGGCACAAGGGCCTGGTTGTTATTGTTCCTGTGCCCTGGGCCTCCACAT
ACGCGGTGCGCGGGCGAGTCGGCAGCGCCAAGGCACATCACAAGACTGACGCTGCTTGAA
GATTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003379A_C01 KCC003379A_c01
         (365 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK15273.1|AF312678_1 FGF homologous factor receptor [Homo sa...    35  0.26
gb|AAH36769.1| Fibroblast growth factor receptor-like 1 precurso...    35  0.26
ref|NP_068742.1| fibroblast growth factor receptor-like 1 precur...    35  0.26
ref|NP_041377.1| 5' end of the coding region for ORF E4 not dete...    35  0.34
ref|XP_211881.1| hypothetical protein XP_211881 [Homo sapiens]         33  0.77

>gb|AAK15273.1|AF312678_1 FGF homologous factor receptor [Homo sapiens]
          Length = 497

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 22/69 (31%), Positives = 27/69 (38%)
 Frame = -2

Query: 328 ALPTRPRTAYVEAQGTGTITTRPLCPPQPPLPSTYPHQFTQNHTLTPVRPHPHTWILGKV 149
           AL   P     E  G+       L P     P  YP  +T  HT T    H H+ + GKV
Sbjct: 430 ALSAGPGVGLCEEHGSPAAPQHLLGPGPVAGPKLYPKLYTDIHTHTHTHSHTHSHVEGKV 489

Query: 148 DRQHTPQKC 122
             QH   +C
Sbjct: 490 -HQHIHYQC 497

>gb|AAH36769.1| Fibroblast growth factor receptor-like 1 precursor [Homo sapiens]
           gi|37181726|gb|AAQ88670.1| FGFRL1 [Homo sapiens]
          Length = 504

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 22/69 (31%), Positives = 27/69 (38%)
 Frame = -2

Query: 328 ALPTRPRTAYVEAQGTGTITTRPLCPPQPPLPSTYPHQFTQNHTLTPVRPHPHTWILGKV 149
           AL   P     E  G+       L P     P  YP  +T  HT T    H H+ + GKV
Sbjct: 437 ALSAGPGVGLCEEHGSPAAPQHLLGPGPVAGPKLYPKLYTDIHTHTHTHSHTHSHVEGKV 496

Query: 148 DRQHTPQKC 122
             QH   +C
Sbjct: 497 -HQHIHYQC 504

>ref|NP_068742.1| fibroblast growth factor receptor-like 1 precursor [Homo sapiens]
           gi|10944887|emb|CAC14171.1| FGFR-like protein [Homo
           sapiens] gi|13447749|gb|AAK26742.1|AF279689_1 fibroblast
           growth factor receptor 5 [Homo sapiens]
          Length = 504

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 22/69 (31%), Positives = 27/69 (38%)
 Frame = -2

Query: 328 ALPTRPRTAYVEAQGTGTITTRPLCPPQPPLPSTYPHQFTQNHTLTPVRPHPHTWILGKV 149
           AL   P     E  G+       L P     P  YP  +T  HT T    H H+ + GKV
Sbjct: 437 ALSAGPGVGLCEEHGSPAAPQHLLGPGPVAGPKLYPKLYTDIHTHTHTHSHTHSHVEGKV 496

Query: 148 DRQHTPQKC 122
             QH   +C
Sbjct: 497 -HQHIHYQC 504

>ref|NP_041377.1| 5' end of the coding region for ORF E4 not determined [Human
           papillomavirus type 42] gi|137714|sp|P27225|VE4_HPV42
           PROBABLE E4 PROTEIN gi|73429|pir||W4WL42 E4 protein -
           human papillomavirus type 42 gi|333216|gb|AAA47045.1| 5'
           end of the coding region for ORF E4 not determined
          Length = 120

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 256 CPPQPPLPSTYPHQFTQNHTLTPVRPHPHTWILGKVDRQH 137
           C PQ PL +T     T+ HT  P +PH H      VD +H
Sbjct: 35  CTPQRPLTTTTQTVQTEQHTTCPSKPHRHENDTDSVDSRH 74

>ref|XP_211881.1| hypothetical protein XP_211881 [Homo sapiens]
          Length = 108

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 3/82 (3%)
 Frame = -1

Query: 293 GPGHRNNNNQALVPTTAAIAIYISPPVYPKPHTHAGQTPSPHLDPWQSGSSAHSSKVRSE 114
           G  HRN   + L    A+    +     P  H         H DP Q+ ++A  S +  +
Sbjct: 12  GRDHRNAMERGLKSEPASGYYLLIACEVPGAHIRPYVIAVSHPDPLQAAAAADGSPIGRQ 71

Query: 113 PSA---FHSCRMQKEVPNPRGN 57
           PS    F +C   +E+P+PR +
Sbjct: 72  PSLISPFRTCLSCRELPSPRSH 93



EST assemble image


clone accession position
1 MX044e12_r BP087832 1 365
2 MX044c11_r BP087824 5 344




Chlamydomonas reinhardtii
Kazusa DNA Research Institute