KCC003370A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003370A_C01 KCC003370A_c01
ccactggaagctggacgcggagcaggagcaagcccgccgcatggccaagtgcgcggcggt
caagcacaccatccagcgcaCGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGA
GACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGGTGCTGCC
CACGCTACAGTTCTACCGCGACGGCAAGCTGCTGTGGGAGCACAAGGGCGTCATGCAGAT
GGAGGCGGGCGTGGGCGAGGGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGG
CGGCGAGGCGCCCTCCAGCCTGGTGGCGGACATCACCAGCCGGGCGGGGCTGCAGCAGTT
CCTGGGGGCGGCGTCTGACCCCAAGGTCCTGCAGGTGCTCAACGTGGCGCTCACCAGTGC
GGGGCCGTGCATCAAGGTCTTCCCCGCGGTAGTGGCGCTCAGCCGGACGTTCAAGGGCTT
CGCGACCTTTGGCCGCCTGGTTGGCGACGTGAACGGCGACACGCGCGCGCTGATCAAGGA
GCTGAATATCATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003370A_C01 KCC003370A_c01
         (553 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC75581.1| putative thioredoxin-like protein CDSP32 [Oryza ...    75  5e-13
gb|AAM63182.1| chloroplast drought-induced stress protein, putat...    74  1e-12
ref|NP_177735.1| thioredoxin family [Arabidopsis thaliana] gi|25...    73  2e-12
pir||T07367 thioredoxin-like protein CDSP32, chloroplast - potat...    72  4e-12
ref|XP_293716.2| similar to Heat shock protein HSP 90-alpha (HSP...    63  2e-09

>dbj|BAC75581.1| putative thioredoxin-like protein CDSP32 [Oryza sativa (japonica
           cultivar-group)]
          Length = 301

 Score = 75.5 bits (184), Expect = 5e-13
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 1/158 (0%)
 Frame = +2

Query: 83  ARECPDVSFLYLETDGSPEREALVQKLGVKVLPTLQFYRDGKLLWEHKGVMQMEAGVGEG 262
           +R C DV FL +  D S     L ++ G+  +P   FY+  + + E +G+   +  +   
Sbjct: 118 SRTCGDVDFLLVMGDESDATRELCRREGITAVPHFTFYKGAEKVHEEEGIGPDQ--LAGD 175

Query: 263 MMYYGDAPTTTSGGEAPSSLVADITSRAGLQQFLGA-ASDPKVLQVLNVALTSAGPCIKV 439
           ++YYGD            S V  + SRA ++  +     +   L VL+V L   GPC+KV
Sbjct: 176 VLYYGDH----------HSAVVQLHSRADVESLISDHRGEGGKLVVLDVGLKRCGPCVKV 225

Query: 440 FPAVVALSRTFKGFATFGRLVGDVNGDTRALIKELNII 553
           +P VV LSRT      F R+ GD N      +++++++
Sbjct: 226 YPTVVKLSRTMADTTVFARMNGDENDSCMEFLRDMDVV 263

>gb|AAM63182.1| chloroplast drought-induced stress protein, putative [Arabidopsis
           thaliana]
          Length = 302

 Score = 73.9 bits (180), Expect = 1e-12
 Identities = 45/157 (28%), Positives = 80/157 (50%)
 Frame = +2

Query: 83  ARECPDVSFLYLETDGSPEREALVQKLGVKVLPTLQFYRDGKLLWEHKGVMQMEAGVGEG 262
           +R C DV FL +  D S +   L ++  ++ +P   FY+  + + E +G+ + +  +G+ 
Sbjct: 119 SRTCNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGI-EPDQLMGD- 176

Query: 263 MMYYGDAPTTTSGGEAPSSLVADITSRAGLQQFLGAASDPKVLQVLNVALTSAGPCIKVF 442
           ++YYGD  +T          V  +  R  +++ +        L VL+V L   GPC+KV+
Sbjct: 177 VLYYGDNHST----------VVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVY 226

Query: 443 PAVVALSRTFKGFATFGRLVGDVNGDTRALIKELNII 553
           P V+ LSR+      F R+ GD N      +K++N+I
Sbjct: 227 PTVLKLSRSMSETVVFARMNGDENDSCMEFLKDMNVI 263

>ref|NP_177735.1| thioredoxin family [Arabidopsis thaliana] gi|25405001|pir||A96789
           protein T23E18.2 [imported] - Arabidopsis thaliana
           gi|6573731|gb|AAF17651.1|AC009978_27 T23E18.2
           [Arabidopsis thaliana] gi|14270247|emb|CAC39419.1|
           plastid thioredoxin [Arabidopsis thaliana]
          Length = 302

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 45/157 (28%), Positives = 79/157 (49%)
 Frame = +2

Query: 83  ARECPDVSFLYLETDGSPEREALVQKLGVKVLPTLQFYRDGKLLWEHKGVMQMEAGVGEG 262
           +R C DV FL +  D S +   L ++  ++ +P   FY+  + + E +G+ + +  +G+ 
Sbjct: 119 SRTCNDVVFLLVMGDESDKTRELCRREKIEKVPHFSFYKSMEKIHEEEGI-EPDQLMGD- 176

Query: 263 MMYYGDAPTTTSGGEAPSSLVADITSRAGLQQFLGAASDPKVLQVLNVALTSAGPCIKVF 442
           ++YYGD            S V  +  R  +++ +        L VL+V L   GPC+KV+
Sbjct: 177 VLYYGDN----------HSAVVQLHGRPDVEKLIDENRTGGKLIVLDVGLKHCGPCVKVY 226

Query: 443 PAVVALSRTFKGFATFGRLVGDVNGDTRALIKELNII 553
           P V+ LSR+      F R+ GD N      +K++N+I
Sbjct: 227 PTVLKLSRSMSETVVFARMNGDENDSCMEFLKDMNVI 263

>pir||T07367 thioredoxin-like protein CDSP32, chloroplast - potato
           gi|2582822|emb|CAA71103.1| CDSP32 protein (Chloroplast
           Drought-induced Stress Protein of 32kDa) [Solanum
           tuberosum]
          Length = 296

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
 Frame = +2

Query: 83  ARECPDVSFLYLETDGSPEREALVQKLGVKVLPTLQFYRDGKLLWEHKGV-MQMEAGVGE 259
           ++ C DV FL +  D + + +AL ++  +  +P   FY+  + + E +G+   + AG   
Sbjct: 113 SKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDLLAG--- 169

Query: 260 GMMYYGDAPTTTSGGEAPSSLVADITSRAGLQQFLGAASDPKVLQVLNVALTSAGPCIKV 439
            ++YYGD+           S V  + SR  +++ +      K L VL+V L   GPC+KV
Sbjct: 170 DVLYYGDS----------HSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKV 219

Query: 440 FPAVVALSRTFKGFATFGRLVGDVNGDTRALIKELNII 553
           +P V+ LS+       F R+ GD N      +K++++I
Sbjct: 220 YPTVIKLSKQMADTVVFARMNGDENDSCMQFLKDMDVI 257

>ref|XP_293716.2| similar to Heat shock protein HSP 90-alpha (HSP 86) [Homo sapiens]
          Length = 1058

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 56/156 (35%), Positives = 63/156 (39%), Gaps = 7/156 (4%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G+ +  GG A HP  GA     +   PGDG     G  GA+  G GA H   
Sbjct: 333 GGGAKHPGGEAKQPGGGAKHPGGGAKHPGGEAKQPGDGAKYPGG--GAKQPGGGAKH--- 387

Query: 193 LPRRQA-AVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
            P  +A   G   +   GGG+  G               GA QPGGG  QPGG A  PGG
Sbjct: 388 -PGGEAKQPGGGAKQPGGGGKQPG--------------GGAKQPGGGAKQPGGGAKQPGG 432

Query: 370 GV*PQGPAGAQRGAHQCGAVHQG----LPRGSGAQP 465
           G    G      G    GA H G     P G G  P
Sbjct: 433 GAKHPGGEAKHPGG---GAKHPGGGAKHPGGEGKHP 465

 Score = 61.6 bits (148), Expect = 7e-09
 Identities = 55/156 (35%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G+ R  GG A HP  GA     +   PG G     G  GA+  G GA     
Sbjct: 116 GGGAKQPGGEARHPGGGAKHPGGGAKHPGGEAKHPGGGAKQPGG--GAKQPGGGAKQ--- 170

Query: 193 LPRRQAA-VGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
            P  +A   G + +H  GG +  G    +      Q   GA QPGGG   PGG A  PGG
Sbjct: 171 -PGGEAKHPGGEAKHPGGGAKQPGGGAKQPGGGAKQPGGGAKQPGGGAKHPGGEAKHPGG 229

Query: 370 GV*PQGPAGAQRGAHQCGAVHQG----LPRGSGAQP 465
                G    Q G    GA H G     P G   QP
Sbjct: 230 EAKHPGGGAKQPGG---GAKHPGGGAKHPGGGAKQP 262

 Score = 61.6 bits (148), Expect = 7e-09
 Identities = 55/160 (34%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G+ +  GG+A HP  GA         PG G     G  GA+  G GA H   
Sbjct: 165 GGGAKQPGGEAKHPGGEAKHPGGGAKQPGGGAKQPGGGAKQPGG--GAKQPGGGAKH--- 219

Query: 193 LPRRQAA-VGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
            P  +A   G + +H  GG +  G               GA QPGGG  QPGG A  PGG
Sbjct: 220 -PGGEAKHPGGEAKHPGGGAKQPGGGAKHPGGGAKHPGGGAKQPGGGAKQPGGEAEHPGG 278

Query: 370 GV*PQGPAGAQRGAHQ----CGAVHQG----LPRGSGAQP 465
                G    Q G        GA H G     P G   QP
Sbjct: 279 EAKHPGGGAKQPGGGAKQPGGGAKHPGRGAKQPGGGAKQP 318

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 53/156 (33%), Positives = 62/156 (38%), Gaps = 7/156 (4%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSA-----GAEAGGQGA 177
           G GA  P G  +  GG A HP  GA     +   PG G     G A     GA+  G GA
Sbjct: 53  GGGAKQPGGGAKHPGGGAKHPGGGAKHPGGEAKHPGGGAKQPGGGAKQPGGGAKHPGGGA 112

Query: 178 AHATVLPRRQAAVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAA 357
            H     ++    G + RH  GG +  G               GA QPGGG  QPGG A 
Sbjct: 113 KHPGGGAKQP---GGEARHPGGGAKHPGGGAKHPGGEAKHPGGGAKQPGGGAKQPGGGAK 169

Query: 358 VPGGGV*PQGPAGAQRGAHQCGAVHQGLPRGSGAQP 465
            PGG    + P G  +  H  G   Q  P G   QP
Sbjct: 170 QPGGEA--KHPGGEAK--HPGGGAKQ--PGGGAKQP 199

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 54/160 (33%), Positives = 63/160 (38%), Gaps = 11/160 (6%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G+ +  GG+A HP  GA         PG G     G  GA+  G GA     
Sbjct: 214 GGGAKHPGGEAKHPGGEAKHPGGGAKQPGGGAKHPGGGAKHPGG--GAKQPGGGAKQ--- 268

Query: 193 LPRRQAA-VGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
            P  +A   G + +H  GG +  G    +         RGA QPGGG  QPGG    PGG
Sbjct: 269 -PGGEAEHPGGEAKHPGGGAKQPGGGAKQPGGGAKHPGRGAKQPGGGAKQPGGGPKQPGG 327

Query: 370 GV*PQGPAGAQRGAHQ----CGAVHQG----LPRGSGAQP 465
           G    G      G        GA H G     P G   QP
Sbjct: 328 GAKHPGGGAKHPGGEAKQPGGGAKHPGGGAKHPGGEAKQP 367

 Score = 59.7 bits (143), Expect = 3e-08
 Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSA-----GAEAGGQGA 177
           G GA  P G  +  GG+A  P  GA         PG G     G A     GA+  G GA
Sbjct: 375 GGGAKQPGGGAKHPGGEAKQPGGGAKQPGGGGKQPGGGAKQPGGGAKQPGGGAKQPGGGA 434

Query: 178 AHATVLPRRQAA-VGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAA 354
            H    P  +A   G   +H  GG +  G +         Q   GA  PGGG   PGG A
Sbjct: 435 KH----PGGEAKHPGGGAKHPGGGAKHPGGEGKHPGGGAKQPGGGAKHPGGGAKHPGGGA 490

Query: 355 AVPGGGV*PQGPAGAQRGAHQCGAVHQGLPRGSGAQP 465
             PGGG    G  G Q G    G   Q  P G G QP
Sbjct: 491 KHPGGGAKQPGGGGKQPG----GGGKQ--PGGGGKQP 521

 Score = 59.3 bits (142), Expect = 3e-08
 Identities = 52/152 (34%), Positives = 60/152 (39%), Gaps = 3/152 (1%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPG-DGRLAGAGSAGAEAGGQGAAHAT 189
           G GA  P G  +  GG+A HP  GA         PG +G+  G G   A+  G GA H  
Sbjct: 424 GGGAKQPGGGAKHPGGEAKHPGGGAKHPGGGAKHPGGEGKHPGGG---AKQPGGGAKHP- 479

Query: 190 VLPRRQAAVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
                    G   +H  GG +  G    +      Q   G  QPGGG  QPGG A  PGG
Sbjct: 480 ---------GGGAKHPGGGAKHPGGGAKQPGGGGKQPGGGGKQPGGGGKQPGGGAKHPGG 530

Query: 370 GV*PQGPAGAQRGAHQCGAVHQGLPRGSGAQP 465
           G    G      G    GA H   P G   QP
Sbjct: 531 GAKHPGGGAKHPGG---GAKH---PGGGAKQP 556

 Score = 58.5 bits (140), Expect = 6e-08
 Identities = 50/147 (34%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSA-----GAEAGGQGA 177
           G GA  P G  +  GG A  P  GA         PG G     G A     GA+  G GA
Sbjct: 396 GGGAKQPGGGGKQPGGGAKQPGGGAKQPGGGAKQPGGGAKHPGGEAKHPGGGAKHPGGGA 455

Query: 178 AHATVLPRRQAAVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAA 357
            H           G +G+H  GG +  G               GA  PGGG  QPGG   
Sbjct: 456 KHP----------GGEGKHPGGGAKQPGGGAKHPGGGAKHPGGGAKHPGGGAKQPGGGGK 505

Query: 358 VPGGGV*PQGPAGAQRGAHQCGAVHQG 438
            PGGG    G  G Q G    GA H G
Sbjct: 506 QPGGGGKQPGGGGKQPGG---GAKHPG 529

 Score = 58.2 bits (139), Expect = 7e-08
 Identities = 50/147 (34%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSA-----GAEAGGQGA 177
           G GA  P G+ +  GG A HP  GA     +   PG G     G A     GA+  G GA
Sbjct: 431 GGGAKHPGGEAKHPGGGAKHPGGGAKHPGGEGKHPGGGAKQPGGGAKHPGGGAKHPGGGA 490

Query: 178 AHATVLPRRQAAVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAA 357
            H           G   +   GGG+  G    +      Q   GA  PGGG   PGG A 
Sbjct: 491 KHP----------GGGAKQPGGGGKQPGGGGKQPGGGGKQPGGGAKHPGGGAKHPGGGAK 540

Query: 358 VPGGGV*PQGPAGAQRGAHQCGAVHQG 438
            PGGG    G    Q G    GA H G
Sbjct: 541 HPGGGAKHPGGGAKQPGG---GAKHPG 564

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 50/143 (34%), Positives = 57/143 (38%), Gaps = 3/143 (2%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G  +  GG A HP  GA     +   PG          GA+  G GA H   
Sbjct: 312 GGGAKQPGGGPKQPGGGAKHPGGGAKHPGGEAKQPG---------GGAKHPGGGAKH--- 359

Query: 193 LPRRQAAVGAQG-RHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGG 369
            P  +A     G ++  GG +  G           Q   GA QPGGG  QPGG A  PGG
Sbjct: 360 -PGGEAKQPGDGAKYPGGGAKQPGGGAKHPGGEAKQPGGGAKQPGGGGKQPGGGAKQPGG 418

Query: 370 GV*PQGPAGAQRGAHQCGAVHQG 438
           G    G    Q G    GA H G
Sbjct: 419 GAKQPGGGAKQPGG---GAKHPG 438

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 55/171 (32%), Positives = 65/171 (37%), Gaps = 22/171 (12%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDG--------RLAGAGS------- 147
           G GA  P G+    GG+A HP  GA         PG G        +  G G+       
Sbjct: 263 GGGAKQPGGEAEHPGGEAKHPGGGAKQPGGGAKQPGGGAKHPGRGAKQPGGGAKQPGGGP 322

Query: 148 ----AGAEAGGQGAAHATVLPRRQA-AVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGA 312
                GA+  G GA H    P  +A   G   +H  GG +  G +  +          GA
Sbjct: 323 KQPGGGAKHPGGGAKH----PGGEAKQPGGGAKHPGGGAKHPGGEAKQPGDGAKYPGGGA 378

Query: 313 LQPGGGHHQPGGAAAVPGGGV*PQGPAGAQRGAHQCGAVHQGLPRGSGAQP 465
            QPGGG   PGG A  PGGG    G  G Q G    G   Q  P G   QP
Sbjct: 379 KQPGGGAKHPGGEAKQPGGGAKQPGGGGKQPG----GGAKQ--PGGGAKQP 423

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 48/140 (34%), Positives = 54/140 (38%), Gaps = 2/140 (1%)
 Frame = +1

Query: 19  GAGASPPHGQVR--GGQAHHPAHGAGVS*RQLPVPGDGRLAGAGSAGAEAGGQGAAHATV 192
           G GA  P G  +  GG A HP  GA         PG G     G  GA+  G GA H   
Sbjct: 522 GGGAKHPGGGAKHPGGGAKHPGGGA-------KHPGGGAKQPGG--GAKHPGGGAKHP-- 570

Query: 193 LPRRQAAVGAQGRHADGGGRGRGHDVLRRRAHHHQWRRGALQPGGGHHQPGGAAAVPGGG 372
                   G + +H  GG +  G                A  PGGG  QPGG A  PGGG
Sbjct: 571 --------GGEAKHPGGGAKHPGGGAKHPGGGAKHPGGEAKHPGGGAKQPGGGAKHPGGG 622

Query: 373 V*PQGPAGAQRGAHQCGAVH 432
              + P G   GA   GA H
Sbjct: 623 A--KHPGG---GAKHPGAEH 637

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 30/77 (38%), Positives = 31/77 (39%), Gaps = 9/77 (11%)
 Frame = +1

Query: 262 HDVLRRRAHHHQWRR------GALQPGGGHHQPGGAAAVPGGGV*PQGPAGAQRGA---H 414
           H  LR +   H W        GA QPGGG  QPGG A  PGGG    G      G    H
Sbjct: 27  HKTLRDQESKHPWGGAKHPGGGAKQPGGGAKQPGGGAKHPGGGAKHPGGGAKHPGGEAKH 86

Query: 415 QCGAVHQGLPRGSGAQP 465
             G   Q  P G   QP
Sbjct: 87  PGGGAKQ--PGGGAKQP 101



EST assemble image


clone accession position
1 MXL002a11_r BP093006 1 300
2 MX022g10_r BP087011 168 553




Chlamydomonas reinhardtii
Kazusa DNA Research Institute