Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003356A_C01 KCC003356A_c01
(505 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO43567.1| prion-like protein [Takifugu rubripes] 36 0.24
dbj|BAC27894.1| unnamed protein product [Mus musculus] 35 0.69
gb|AAH16258.1| Vps11 protein [Mus musculus] 34 0.90
ref|XP_236189.2| similar to Vps11 protein [Rattus norvegicus] 34 0.90
sp|Q91W86|VP11_MOUSE Vacuolar protein sorting 11 34 1.2
>gb|AAO43567.1| prion-like protein [Takifugu rubripes]
Length = 424
Score = 36.2 bits (82), Expect = 0.24
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 9/70 (12%)
Frame = +2
Query: 191 FTQRTYGSTSGS---------FHAPINNGERHIRTVVSKVKLIPISGLVMRQASNAPLLH 343
+ RTYG S + P+ N ERH+ T + ++L+P +Q SN P L+
Sbjct: 245 YMYRTYGVKSTDANDYSRDYFYSKPLENYERHMNTCMKNIELLPEEN---QQKSNKPALY 301
Query: 344 LPAGDRLASN 373
P+ LA N
Sbjct: 302 TPSSPVLAPN 311
>dbj|BAC27894.1| unnamed protein product [Mus musculus]
Length = 813
Score = 34.7 bits (78), Expect = 0.69
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
Frame = +2
Query: 161 SCTTAHRNRTFTQRTYGSTSGSFHAPINNGE----RHIRTVVSKVKLIPISGLVMRQASN 328
SC T H N F G T GS +N G+ RH +T + P++GL RQA
Sbjct: 144 SCLTVHENHNFM--AIGFTDGS--VTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGK 199
Query: 329 APLLHLPAGDRLASNVAS 382
L + + + S + S
Sbjct: 200 TTHLFVVTTENVQSYIVS 217
>gb|AAH16258.1| Vps11 protein [Mus musculus]
Length = 943
Score = 34.3 bits (77), Expect = 0.90
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
Frame = +2
Query: 161 SCTTAHRNRTFTQRTYGSTSGSFHAPINNGE----RHIRTVVSKVKLIPISGLVMRQASN 328
SC T H N F G T GS +N G+ RH +T + P++GL RQA
Sbjct: 146 SCLTVHENLNFM--AIGFTDGS--VTLNKGDITRDRHSKTQILHKGSYPVTGLAFRQAGK 201
Query: 329 APLLHLPAGDRLASNVAS 382
L + + + S + S
Sbjct: 202 TTHLFVVTTENVQSYIVS 219
>ref|XP_236189.2| similar to Vps11 protein [Rattus norvegicus]
Length = 927
Score = 34.3 bits (77), Expect = 0.90
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
Frame = +2
Query: 161 SCTTAHRNRTFTQRTYGSTSGSFHAPINNGE----RHIRTVVSKVKLIPISGLVMRQASN 328
SC T H N F G T GS +N G+ RH +T + P++GL RQA
Sbjct: 144 SCLTVHENLNFM--AIGFTDGS--VTLNKGDITRDRHSKTQILHKGSYPVTGLAFRQAGK 199
Query: 329 APLLHLPAGDRLASNVAS 382
L + + + S + S
Sbjct: 200 TTHLFVVTTENVQSYIVS 217
>sp|Q91W86|VP11_MOUSE Vacuolar protein sorting 11
Length = 941
Score = 33.9 bits (76), Expect = 1.2
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
Frame = +2
Query: 161 SCTTAHRNRTFTQRTYGSTSGSFHAPINNGE----RHIRTVVSKVKLIPISGLVMRQASN 328
SC T H N F G T GS +N G+ RH +T + P++GL RQA
Sbjct: 144 SCLTVHENLNFM--AIGFTDGS--VTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGK 199
Query: 329 APLLHLPAGDRLASNVAS 382
L + + + S + S
Sbjct: 200 TTHLFVVTTENVQSYIVS 217
