KCC003336A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003336A_C01 KCC003336A_c01
caatgcccccgtcactctttcccagctctatATTACCATAGATCTATAGCCTGACAAGGA
ACGTCAGGCGAGAGTTGATATAATGGCCACTGTCGGCGGGATGAATGCGCGTGCGCTCGC
CTCGGCGCGGGCGCCGCTTTGCCGCCGCGCAGTGCTGCTGCCTGCCGGTCGCACGCGCGT
TGTGATGCGCGTTGGCGAGATTCGCCGCCCGGAGTACATCCCGAACCGCATTGATGACCC
CAACTACGTGCGCATCTTCGACACCACCCTGCGCGACGGCGAGCAGTCCCCGGGCGCCAC
GCTGACCAGCAAGGAGAAGCTGGACATTGCGCGGCAGCTGGCCAAGCTGGGCGTGGACAT
CATCGAGGCGGGCTTCCCCGTGGCCTCGCCCGACGACTTCGAGGCGGTGCGCACCATCGC
CATGGAGGTGGGCAACGACGTGCAGCCGGACGGCTACGTGCCCGTCATCTGCGGCCTGTC
CCGGACCAAGCTCCAGGACCTGGAGCGCGCCTGGGACGCAGTGCGCCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003336A_C01 KCC003336A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173285.1| 2-isopropylmalate synthase -related [Arabidopsi...   185  3e-46
gb|AAF26002.1|AC013354_21 F15H18.3 [Arabidopsis thaliana]             185  3e-46
dbj|BAC43169.1| putative 2-isopropylmalate synthase [Arabidopsis...   182  3e-45
ref|NP_177544.1| 2-isopropylmalate synthase -related [Arabidopsi...   182  3e-45
sp|O04973|LU1A_LYCPN 2-isopropylmalate synthase A (Alpha-isoprop...   167  8e-41

>ref|NP_173285.1| 2-isopropylmalate synthase -related [Arabidopsis thaliana]
          Length = 660

 Score =  185 bits (470), Expect = 3e-46
 Identities = 90/108 (83%), Positives = 97/108 (89%)
 Frame = +2

Query: 206 RPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPVA 385
           RPEYIPNRI DPNYVR+FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP A
Sbjct: 75  RPEYIPNRISDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA 134

Query: 386 SPDDFEAVRTIAMEVGNDVQPDGYVPVICGLSRTKLQDLERAWDAVRH 529
           S DDFEAV+TIA  VGN V  +GYVPVICGLSR   +D+ERAWDAV++
Sbjct: 135 SKDDFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIERAWDAVKY 182

>gb|AAF26002.1|AC013354_21 F15H18.3 [Arabidopsis thaliana]
          Length = 675

 Score =  185 bits (470), Expect = 3e-46
 Identities = 90/108 (83%), Positives = 97/108 (89%)
 Frame = +2

Query: 206 RPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPVA 385
           RPEYIPNRI DPNYVR+FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP A
Sbjct: 75  RPEYIPNRISDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA 134

Query: 386 SPDDFEAVRTIAMEVGNDVQPDGYVPVICGLSRTKLQDLERAWDAVRH 529
           S DDFEAV+TIA  VGN V  +GYVPVICGLSR   +D+ERAWDAV++
Sbjct: 135 SKDDFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIERAWDAVKY 182

>dbj|BAC43169.1| putative 2-isopropylmalate synthase [Arabidopsis thaliana]
          Length = 338

 Score =  182 bits (461), Expect = 3e-45
 Identities = 89/109 (81%), Positives = 96/109 (87%)
 Frame = +2

Query: 203 RRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPV 382
           RRP YIPNRI DPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP 
Sbjct: 72  RRPNYIPNRISDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPA 131

Query: 383 ASPDDFEAVRTIAMEVGNDVQPDGYVPVICGLSRTKLQDLERAWDAVRH 529
           AS DDFEAV+TIA  VGN V  +GYVPVICGLSR   +D+E AW+AV++
Sbjct: 132 ASKDDFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIETAWEAVKY 180

>ref|NP_177544.1| 2-isopropylmalate synthase -related [Arabidopsis thaliana]
           gi|25311586|pir||C96768 hypothetical protein F2P9.9
           [imported] - Arabidopsis thaliana
           gi|12325154|gb|AAG52530.1|AC016662_24 putative
           2-isopropylmalate synthase; 30920-27612 [Arabidopsis
           thaliana] gi|12330687|gb|AAG52882.1|AF327647_1
           2-isopropylmalate synthase [Arabidopsis thaliana]
           gi|16323111|gb|AAL15290.1| At1g74040/F2P9_9 [Arabidopsis
           thaliana] gi|23463041|gb|AAN33190.1| At1g74040/F2P9_9
           [Arabidopsis thaliana]
          Length = 631

 Score =  182 bits (461), Expect = 3e-45
 Identities = 89/109 (81%), Positives = 96/109 (87%)
 Frame = +2

Query: 203 RRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPV 382
           RRP YIPNRI DPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP 
Sbjct: 72  RRPNYIPNRISDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPA 131

Query: 383 ASPDDFEAVRTIAMEVGNDVQPDGYVPVICGLSRTKLQDLERAWDAVRH 529
           AS DDFEAV+TIA  VGN V  +GYVPVICGLSR   +D+E AW+AV++
Sbjct: 132 ASKDDFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIETAWEAVKY 180

>sp|O04973|LU1A_LYCPN 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A)
           (Alpha-IPM synthetase A) gi|2213882|gb|AAB61598.1|
           2-isopropylmalate synthase [Lycopersicon pennellii]
          Length = 589

 Score =  167 bits (423), Expect = 8e-41
 Identities = 76/109 (69%), Positives = 95/109 (86%)
 Frame = +2

Query: 203 RRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPV 382
           RRPEY+P++I DP YVRIFDTTLRDGEQSPGAT+T+KEKLD+ARQLAKLGVDIIEAGFP 
Sbjct: 33  RRPEYVPSKISDPKYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPA 92

Query: 383 ASPDDFEAVRTIAMEVGNDVQPDGYVPVICGLSRTKLQDLERAWDAVRH 529
           +S  DFE+V+ IA E+GN+   +G+VPVICGLSR    D+++AW+AV++
Sbjct: 93  SSEADFESVKLIAEEIGNNTDENGFVPVICGLSRCNKSDIDKAWEAVKY 141



EST assemble image


clone accession position
1 MXL080e12_r BP097740 1 379
2 LCL095b12_r AV631505 32 530




Chlamydomonas reinhardtii
Kazusa DNA Research Institute