KCC003328A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003328A_C01 KCC003328A_c01
ATAACACGCGCTAGGGTCCATACTGAAAGGGTGGAACTGTCGCGACACCCGACAACTCCC
TGTAGGACGCTCCCCTCGCTCTTCGACCAATTCAGTTGTACACAGTGCTGCAACACGGCG
TAGGATACTACACGCATATACAAGTGCTAGGTAGTCTAGAGCCTGGCCTGCGCGCCAACG
CGTGTCGACGAGCTGCGGGGCTTACGTGTCCCCGGTGTTGGGGGTGGTGCGCGGAGTCGA
CACACACACGCCGAGACGGCCCTTTCACCCTGGCCATTGGCACAGCTCAAGCAACAGGTG
CTGATGCACTAACTAGGCCACGGACCTTTCCCAGGCAGCTGCCTTGACACTCAACTCCAA
GCCTTGACCTCCTCCGAGCGAGAGGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003328A_C01 KCC003328A_c01
         (388 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG29834.1|AF308446_1 unknown [Paracoccus pantotrophus]             33  0.74
gb|AAM94762.1| CalU4 [Micromonospora echinospora]                      33  0.97
dbj|BAB00652.1| unnamed protein product [Oryza sativa (japonica ...    33  1.3
ref|XP_344726.1| similar to acetylglucosaminyltransferase-like p...    33  1.3
ref|XP_330013.1| hypothetical protein [Neurospora crassa] gi|289...    32  2.2

>gb|AAG29834.1|AF308446_1 unknown [Paracoccus pantotrophus]
          Length = 251

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 21/42 (50%), Positives = 21/42 (50%)
 Frame = -1

Query: 271 RVKGPSRRVCVDSAHHPQHRGHVSPAARRHALARRPGSRLPS 146
           RV  PSRR    S     HR       RRH   RRPGSRLPS
Sbjct: 128 RVSKPSRRSRPSSLPRRPHRR----TPRRHRRMRRPGSRLPS 165

>gb|AAM94762.1| CalU4 [Micromonospora echinospora]
          Length = 264

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 66  DAPLALRPIQLYTVLQHGVGYYTHIQVLGSLEPGLRANA-CRRAAGLTCPRC 218
           D P AL  +  +T+   GVG++     LG++ PGL A A      G+T P C
Sbjct: 97  DLPTALAGVGYHTLCLGGVGFFNRRSPLGAVLPGLFAEAHWEPEFGVTSPTC 148

>dbj|BAB00652.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|11138075|dbj|BAB17748.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
           gi|13873018|dbj|BAB44122.1| B1085F09.18 [Oryza sativa
           (japonica cultivar-group)]
          Length = 247

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/75 (30%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
 Frame = -1

Query: 385 PLARRRSRL-GVECQGSCLGKVRGLVSASAPVA*AVPMARVKGPSRRVCVDSAHHPQHRG 209
           P A RRS+  G +   + L KVR  V+A+AP+  A  ++ ++GP+      +AH  ++  
Sbjct: 134 PFASRRSKHEGFDPFAAALEKVRRDVAAAAPIRRARSLSPLRGPA---VAAAAHRKENNP 190

Query: 208 HVSPAARRHALARRP 164
           + +    R   A RP
Sbjct: 191 YAAAVPARAVTASRP 205

>ref|XP_344726.1| similar to acetylglucosaminyltransferase-like protein [Rattus
           norvegicus]
          Length = 598

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 17/45 (37%), Positives = 24/45 (52%)
 Frame = -2

Query: 192 LVDTRWRAGQALDYLALVYACSILRRVAALCTTELVEERGERPTG 58
           L+DT WR   AL +  LV    ++     LC ++L+E RGE   G
Sbjct: 51  LIDTGWRGCPALSF-TLVGQAVMIEACCGLCQSQLMERRGELSEG 94

>ref|XP_330013.1| hypothetical protein [Neurospora crassa] gi|28925514|gb|EAA34546.1|
           hypothetical protein [Neurospora crassa]
          Length = 171

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 272 QGERAVSACVCRLRAPPPTPGTRKPRSSSTRVGAQARL 159
           +G  +  A  CR + PP  P    P SSS R G+ +RL
Sbjct: 37  EGGVSCQAVWCRFKTPPSPPSPPSPPSSSPRSGSSSRL 74



EST assemble image


clone accession position
1 LCL090b03_r AV631196 1 388
2 MXL093h08_r BP098478 1 263




Chlamydomonas reinhardtii
Kazusa DNA Research Institute