KCC003314A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003314A_C01 KCC003314A_c01
ccatgctgttcatggactggcgcgacgaccacacgcaggcgccggggctggaggccatgc
gcgcagccaacaccgcgctgCCCACCTTCCTGTACGCCATGCCCTTCACCAAGAACCTGG
TGTTCCTGGAGGAGACCAGCCTGGTGTCGCGGCCCGCGGTGGACTTCCCCGAGCTCAAGG
ACCGCCTGCAGGCGCGGCTGCAGCACCTGGGGATCAAGGTGACCAACGTGCTGGAGGAGG
AGTACTGCCTCATCCCCATGGGCGGCGTGCTGCCCAAACACCCACAGCGCGTGCTGGCCA
TTGGCGGCACAGCCGGCATGGTGCATCCCTCCACGGGCTTCATGATCAGCCGCATGATGG
GCGCGGCGCCCACGGTTGCCGACACCATTGTGGATCAGCTCAGTCGCCCCGCCGACAAGG
CCAGCGAGTCAGGCGCCCCGCTGCGCCCCTCCAGCGAGGCGGAGGCGGAGTCCATGGCCG
CCGCCGTGTGGGCCGCCACCTGGCCGCTGGAGCGCGTGCGGCAGCGCGCCTTCTTCACCT
TTGGCATGGACGTGCTGCTCAAGCTCAACCTGCCGCAGATCCGGGAGTTCTTCAGGGCGT
TCTTCAGCCTCAGTGACTTCCACTGGCACGGCTTCCTGTCCACACGCCTGTCGCTGCCGC
AGCTGATTGTGTTTGGCCTGACGCTGTTCTGGAAGAGCTCCAACCAGGCTCGCGCCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003314A_C01 KCC003314A_c01
         (718 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplast precurso...   259  2e-68
gb|AAN86060.1| lycopene cyclase [Citrus unshiu]                       258  8e-68
gb|AAM21152.1| lycopene beta-cyclase [Citrus sinensis]                258  8e-68
gb|AAF44700.2|AF240787_1 lycopene beta-cyclase [Citrus sinensis]      258  8e-68
gb|AAD38049.2| lycopene cyclase [Citrus x paradisi]                   258  8e-68

>sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplast precursor
           gi|999441|emb|CAA60119.1| lycopene synthase [Capsicum
           annuum]
          Length = 498

 Score =  259 bits (663), Expect = 2e-68
 Identities = 130/237 (54%), Positives = 170/237 (70%)
 Frame = +3

Query: 3   MLFMDWRDDHTQAPGLEAMRAANTALPTFLYAMPFTKNLVFLEETSLVSRPAVDFPELKD 182
           M+FMDWRD H +      ++  N+ +PTFLYAMPF+ N +FLEETSLV+RP +   ++++
Sbjct: 255 MVFMDWRDSHLK--NNVELKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLGMDDIQE 312

Query: 183 RLQARLQHLGIKVTNVLEEEYCLIPMGGVLPKHPQRVLAIGGTAGMVHPSTGFMISRMMG 362
           R+ ARL HLGIKV ++ E+E+C+IPMGG LP  PQRV+ IGGTAGMVHPSTG+M++R + 
Sbjct: 313 RMVARLSHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLA 372

Query: 363 AAPTVADTIVDQLSRPADKASESGAPLRPSSEAEAESMAAAVWAATWPLERVRQRAFFTF 542
           AAP VA+ I+  LS    + S SG           + ++AAVW   WP+ER RQR FF F
Sbjct: 373 AAPVVANAIIQYLS---SERSHSG-----------DELSAAVWKDLWPIERRRQREFFCF 418

Query: 543 GMDVLLKLNLPQIREFFRAFFSLSDFHWHGFLSTRLSLPQLIVFGLTLFWKSSNQAR 713
           GMD+LLKL+LP  R FF AFF L   +WHGFLS+RL LP+LIVFGL+LF  +SN +R
Sbjct: 419 GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 475

>gb|AAN86060.1| lycopene cyclase [Citrus unshiu]
          Length = 504

 Score =  258 bits (658), Expect = 8e-68
 Identities = 129/237 (54%), Positives = 169/237 (70%)
 Frame = +3

Query: 3   MLFMDWRDDHTQAPGLEAMRAANTALPTFLYAMPFTKNLVFLEETSLVSRPAVDFPELKD 182
           M+FMDWRD H        ++ AN+ +PTFLYAMPF+ N +FLEETSLV+RP V   ++++
Sbjct: 261 MVFMDWRDSHLN--NNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQE 318

Query: 183 RLQARLQHLGIKVTNVLEEEYCLIPMGGVLPKHPQRVLAIGGTAGMVHPSTGFMISRMMG 362
           R+ ARL+HLGIKV ++ E+E+C+IPMGG LP  PQRV+ IGGTAGMVHPSTG+M++R + 
Sbjct: 319 RMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLA 378

Query: 363 AAPTVADTIVDQLSRPADKASESGAPLRPSSEAEAESMAAAVWAATWPLERVRQRAFFTF 542
           AAP VA+ IV  LS  +D++                 ++A VW   WP+ER RQR FF F
Sbjct: 379 AAPIVANAIVRSLS--SDRS------------ISGHKLSAEVWKDLWPIERRRQREFFCF 424

Query: 543 GMDVLLKLNLPQIREFFRAFFSLSDFHWHGFLSTRLSLPQLIVFGLTLFWKSSNQAR 713
           GMD+LLKL+LP  R FF AFF L   +WHGFLS+RL LP+L+VFGL+LF  +SN +R
Sbjct: 425 GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 481

>gb|AAM21152.1| lycopene beta-cyclase [Citrus sinensis]
          Length = 504

 Score =  258 bits (658), Expect = 8e-68
 Identities = 129/237 (54%), Positives = 169/237 (70%)
 Frame = +3

Query: 3   MLFMDWRDDHTQAPGLEAMRAANTALPTFLYAMPFTKNLVFLEETSLVSRPAVDFPELKD 182
           M+FMDWRD H        ++ AN+ +PTFLYAMPF+ N +FLEETSLV+RP V   ++++
Sbjct: 261 MVFMDWRDSHLN--NNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQE 318

Query: 183 RLQARLQHLGIKVTNVLEEEYCLIPMGGVLPKHPQRVLAIGGTAGMVHPSTGFMISRMMG 362
           R+ ARL+HLGIKV ++ E+E+C+IPMGG LP  PQRV+ IGGTAGMVHPSTG+M++R + 
Sbjct: 319 RMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLA 378

Query: 363 AAPTVADTIVDQLSRPADKASESGAPLRPSSEAEAESMAAAVWAATWPLERVRQRAFFTF 542
           AAP VA+ IV  LS  +D++                 ++A VW   WP+ER RQR FF F
Sbjct: 379 AAPIVANAIVRSLS--SDRS------------ISGHKLSAEVWKDLWPIERRRQREFFCF 424

Query: 543 GMDVLLKLNLPQIREFFRAFFSLSDFHWHGFLSTRLSLPQLIVFGLTLFWKSSNQAR 713
           GMD+LLKL+LP  R FF AFF L   +WHGFLS+RL LP+L+VFGL+LF  +SN +R
Sbjct: 425 GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 481

>gb|AAF44700.2|AF240787_1 lycopene beta-cyclase [Citrus sinensis]
          Length = 504

 Score =  258 bits (658), Expect = 8e-68
 Identities = 129/237 (54%), Positives = 169/237 (70%)
 Frame = +3

Query: 3   MLFMDWRDDHTQAPGLEAMRAANTALPTFLYAMPFTKNLVFLEETSLVSRPAVDFPELKD 182
           M+FMDWRD H        ++ AN+ +PTFLYAMPF+ N +FLEETSLV+RP V   ++++
Sbjct: 261 MVFMDWRDSHLN--NNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQE 318

Query: 183 RLQARLQHLGIKVTNVLEEEYCLIPMGGVLPKHPQRVLAIGGTAGMVHPSTGFMISRMMG 362
           R+ ARL+HLGIKV ++ E+E+C+IPMGG LP  PQRV+ IGGTAGMVHPSTG+M++R + 
Sbjct: 319 RMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLA 378

Query: 363 AAPTVADTIVDQLSRPADKASESGAPLRPSSEAEAESMAAAVWAATWPLERVRQRAFFTF 542
           AAP VA+ IV  LS  +D++                 ++A VW   WP+ER RQR FF F
Sbjct: 379 AAPIVANAIVRSLS--SDRS------------ISGHKLSAEVWKDLWPIERRRQREFFCF 424

Query: 543 GMDVLLKLNLPQIREFFRAFFSLSDFHWHGFLSTRLSLPQLIVFGLTLFWKSSNQAR 713
           GMD+LLKL+LP  R FF AFF L   +WHGFLS+RL LP+L+VFGL+LF  +SN +R
Sbjct: 425 GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 481

>gb|AAD38049.2| lycopene cyclase [Citrus x paradisi]
          Length = 524

 Score =  258 bits (658), Expect = 8e-68
 Identities = 129/237 (54%), Positives = 169/237 (70%)
 Frame = +3

Query: 3   MLFMDWRDDHTQAPGLEAMRAANTALPTFLYAMPFTKNLVFLEETSLVSRPAVDFPELKD 182
           M+FMDWRD H        ++ AN+ +PTFLYAMPF+ N +FLEETSLV+RP V   ++++
Sbjct: 281 MVFMDWRDSHLN--NNSQLKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQE 338

Query: 183 RLQARLQHLGIKVTNVLEEEYCLIPMGGVLPKHPQRVLAIGGTAGMVHPSTGFMISRMMG 362
           R+ ARL+HLGIKV ++ E+E+C+IPMGG LP  PQRV+ IGGTAGMVHPSTG+M++R + 
Sbjct: 339 RMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLA 398

Query: 363 AAPTVADTIVDQLSRPADKASESGAPLRPSSEAEAESMAAAVWAATWPLERVRQRAFFTF 542
           AAP VA+ IV  LS  +D++                 ++A VW   WP+ER RQR FF F
Sbjct: 399 AAPIVANAIVRSLS--SDRS------------ISGHKLSAEVWKDLWPIERRRQREFFCF 444

Query: 543 GMDVLLKLNLPQIREFFRAFFSLSDFHWHGFLSTRLSLPQLIVFGLTLFWKSSNQAR 713
           GMD+LLKL+LP  R FF AFF L   +WHGFLS+RL LP+L+VFGL+LF  +SN +R
Sbjct: 445 GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 501



EST assemble image


clone accession position
1 MXL050f08_r BP095989 1 380
2 LCL086a08_r AV630902 215 718




Chlamydomonas reinhardtii
Kazusa DNA Research Institute