KCC003312A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003312A_C01 KCC003312A_c01
ctcggttagagtttgtgaaacgCTTGGCAGTTTTACAGCATTTCAAACCAGAAGACTCTG
ATTGTGCAAATGCGGAAGGAAGCGACTCGTCTTGTGTCCGCCCTGCTGCGGGCGGGCAAC
AATGGCGTGTCTACGTCGTGGGCTGTTGGTGGCACTCGCCTCAAGTCGGCGATGCCCCAG
CCTGATGAGAAGAAGGACGAGGACCTGCATGCCAAGGAGGGCAAGGTGCTGCACCCTCAC
CTTCTGAACGAGAACGTGGTGAAGACTCAGTATGCCGTCCGTGGCGAGCTTTACCTGCGC
GCTGAGCAGCTCCGCAAGGAGGGCAAGGAGATCATTTTCACAAACGTCGGAAACCCGCAC
GCGCTGGGTGCCAAGCCCCTGACCTTCACCCGTCAGGTGCTAGCCCTGTGCGCCGCGCCC
TTCCTGCTGGATCACCCCAAGGTGGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003312A_C01 KCC003312A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T08064 alanine transaminase (EC 2.6.1.2) - Chlamydomonas re...   254  2e-67
gb|AAK25905.1|AF360195_1 putative alanine aminotransferase [Arab...   114  2e-25
gb|AAL24255.1| At1g23310/F26F24_4 [Arabidopsis thaliana] gi|2736...   114  2e-25
ref|NP_564192.2| alanine aminotransferase -related [Arabidopsis ...   114  2e-25
gb|AAO84040.1| alanine aminotransferase [Oryza sativa (indica cu...   114  4e-25

>pir||T08064 alanine transaminase (EC 2.6.1.2) - Chlamydomonas reinhardtii
           gi|1353352|gb|AAB01685.1| alanine aminotransferase
          Length = 521

 Score =  254 bits (649), Expect = 2e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +1

Query: 70  MRKEATRLVSALLRAGNNGVSTSWAVGGTRLKSAMPQPDEKKDEDLHAKEGKVLHPHLLN 249
           MRKEATRLVSALLRAGNNGVSTSWAVGGTRLKSAMPQPDEKKDEDLHAKEGKVLHPHLLN
Sbjct: 1   MRKEATRLVSALLRAGNNGVSTSWAVGGTRLKSAMPQPDEKKDEDLHAKEGKVLHPHLLN 60

Query: 250 ENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVLALCAAPFLL 429
           ENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVLALCAAPFLL
Sbjct: 61  ENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVLALCAAPFLL 120

Query: 430 DHPKVE 447
           DHPKVE
Sbjct: 121 DHPKVE 126

>gb|AAK25905.1|AF360195_1 putative alanine aminotransferase [Arabidopsis thaliana]
          Length = 481

 Score =  114 bits (286), Expect = 2e-25
 Identities = 57/74 (77%), Positives = 61/74 (82%)
 Frame = +1

Query: 223 KVLHPHLLNENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVL 402
           K L    LNENV K QYAVRGELYLRA +L+KEGK+IIFTNVGNPHALG KPLTF RQV+
Sbjct: 4   KALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVV 63

Query: 403 ALCAAPFLLDHPKV 444
           ALC APFLLD P V
Sbjct: 64  ALCQAPFLLDDPNV 77

>gb|AAL24255.1| At1g23310/F26F24_4 [Arabidopsis thaliana]
           gi|27363280|gb|AAO11559.1| At1g23310/F26F24_4
           [Arabidopsis thaliana]
          Length = 481

 Score =  114 bits (286), Expect = 2e-25
 Identities = 57/74 (77%), Positives = 61/74 (82%)
 Frame = +1

Query: 223 KVLHPHLLNENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVL 402
           K L    LNENV K QYAVRGELYLRA +L+KEGK+IIFTNVGNPHALG KPLTF RQV+
Sbjct: 4   KALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVV 63

Query: 403 ALCAAPFLLDHPKV 444
           ALC APFLLD P V
Sbjct: 64  ALCQAPFLLDDPNV 77

>ref|NP_564192.2| alanine aminotransferase -related [Arabidopsis thaliana]
           gi|25287209|pir||B86367 protein F26F24.16 [imported] -
           Arabidopsis thaliana
           gi|9295709|gb|AAF87015.1|AC005292_24 F26F24.16
           [Arabidopsis thaliana] gi|15912203|gb|AAL08235.1|
           At1g23310/F26F24_4 [Arabidopsis thaliana]
           gi|23297208|gb|AAN12918.1| putative alanine
           aminotransferase [Arabidopsis thaliana]
           gi|24461827|gb|AAN62332.1|AF479639_1
           glutamate:glyoxylate aminotransferase 1 [Arabidopsis
           thaliana]
          Length = 481

 Score =  114 bits (286), Expect = 2e-25
 Identities = 57/74 (77%), Positives = 61/74 (82%)
 Frame = +1

Query: 223 KVLHPHLLNENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVL 402
           K L    LNENV K QYAVRGELYLRA +L+KEGK+IIFTNVGNPHALG KPLTF RQV+
Sbjct: 4   KALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVV 63

Query: 403 ALCAAPFLLDHPKV 444
           ALC APFLLD P V
Sbjct: 64  ALCQAPFLLDDPNV 77

>gb|AAO84040.1| alanine aminotransferase [Oryza sativa (indica cultivar-group)]
          Length = 484

 Score =  114 bits (284), Expect = 4e-25
 Identities = 55/67 (82%), Positives = 59/67 (87%)
 Frame = +1

Query: 244 LNENVVKTQYAVRGELYLRAEQLRKEGKEIIFTNVGNPHALGAKPLTFTRQVLALCAAPF 423
           LNENV K QYAVRGELYLRA +L+KEGK+IIFTNVGNPHALG KPLTF RQV+ALC APF
Sbjct: 17  LNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPF 76

Query: 424 LLDHPKV 444
           LLD P V
Sbjct: 77  LLDDPNV 83



EST assemble image


clone accession position
1 MXL065a09_r BP096798 1 447
2 LCL085h10_r AV630895 23 297
3 MXL035f11_r BP095092 26 408




Chlamydomonas reinhardtii
Kazusa DNA Research Institute