KCC003310A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003310A_C01 KCC003310A_c01
TAACGGTTCATCACATTGGTATCGAGACTAACTTTCCTGACCTCAATTTTCCACAACTCG
CGATACTGGTCGCAACTTTTTAAAATGAGCACTGCAAGTGCTGCGGCTCGCGCTCGCGAG
ACCGAGGCTGCTCTGCAGCAACAGCAACAGCAGCAGCCGCAAATTCCTGGCGCTGCTGGC
GTAGTGGGTGCCAATATTCCTCCGGTCAACAATGGCGACCCGCCCGCTCAGGCCGCAGCG
GCTCAGGCTGCTGCAGCGGAGGAGCAGGCTCGCATTGCGGCTAATGCTTCACGGCTCCGC
GCCATGCCCCTCAACGACACGCCGGTCGACGACGGACGAGGACATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003310A_C01 KCC003310A_c01
         (346 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD39046.1| hypothetical protein [Homo sapiens]                    49  2e-05
pir||T13998 gene mastermind protein - fruit fly (Drosophila viri...    45  3e-04
gb|AAG37909.1|AF317732_1 CIA5 [Chlamydomonas reinhardtii] gi|118...    45  3e-04
dbj|BAB19629.1| CCM1-A [Chlamydomonas reinhardtii] gi|11875323|d...    45  3e-04
ref|NP_730941.1| Inositol 1,4,5,-tris-phosphate receptor CG1063-...    43  0.001

>emb|CAD39046.1| hypothetical protein [Homo sapiens]
          Length = 980

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = -3

Query: 323 GVSLRGMARSREALAAMRACSSAAAA*AAAA*AGGSPLLTGGILAPTTPAAPGICG---- 156
           G  L       EA+AA  A ++AAA  AA A A  +P+          P   G C     
Sbjct: 4   GPQLAAPGPGAEAVAAAAAAAAAAAPGAATAEAEVAPVRVRAARPEPQPGGAGRCAGSCW 63

Query: 155 CCCCCCC-----RAASVSRARAAALA 93
           CCCCCCC     RA + +RA AA  A
Sbjct: 64  CCCCCCCPPFAARAPAAARAPAAVCA 89

>pir||T13998 gene mastermind protein - fruit fly (Drosophila virilis)
            gi|157834|gb|AAC37201.1| mastermind
          Length = 1655

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +1

Query: 88   STASAAARARETEAALQQQQQQQPQIPGAAGVVGANIPP-VNNGDPPAQAAAAQAAAAEE 264
            + A+AAA A++ +AA  QQQQQQ             +PP +      AQAAAA AAAA  
Sbjct: 1066 AAAAAAAAAQQQQAAAAQQQQQQ-------------VPPNMRQRQTQAQAAAAAAAAAAA 1112

Query: 265  QARIAANAS 291
            QA+ AANA+
Sbjct: 1113 QAQAAANAN 1121

>gb|AAG37909.1|AF317732_1 CIA5 [Chlamydomonas reinhardtii] gi|11875321|dbj|BAB19630.1| CCM1-B
           [Chlamydomonas reinhardtii] gi|11875325|dbj|BAB19632.1|
           CCM1-B [Chlamydomonas reinhardtii]
          Length = 698

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/56 (46%), Positives = 33/56 (58%)
 Frame = +1

Query: 103 AARARETEAALQQQQQQQPQIPGAAGVVGANIPPVNNGDPPAQAAAAQAAAAEEQA 270
           +A A++ +   QQQQQQQP +P A   V    P V++G PP   AAA AAAA   A
Sbjct: 312 SAHAQQQQQQQQQQQQQQPGVPAAPPAV----PGVHDGMPPGTVAAAAAAAAAAAA 363

>dbj|BAB19629.1| CCM1-A [Chlamydomonas reinhardtii] gi|11875323|dbj|BAB19631.1|
           CCM1-A [Chlamydomonas reinhardtii]
          Length = 699

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/56 (46%), Positives = 33/56 (58%)
 Frame = +1

Query: 103 AARARETEAALQQQQQQQPQIPGAAGVVGANIPPVNNGDPPAQAAAAQAAAAEEQA 270
           +A A++ +   QQQQQQQP +P A   V    P V++G PP   AAA AAAA   A
Sbjct: 313 SAHAQQQQQQQQQQQQQQPGVPAAPPAV----PGVHDGMPPGTVAAAAAAAAAAAA 364

>ref|NP_730941.1| Inositol 1,4,5,-tris-phosphate receptor CG1063-PB [Drosophila
            melanogaster] gi|23170365|gb|AAN13240.1| CG1063-PB
            [Drosophila melanogaster]
          Length = 2837

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 32/108 (29%), Positives = 49/108 (44%)
 Frame = +1

Query: 10   ITLVSRLTFLTSIFHNSRYWSQLFKMSTASAAARARETEAALQQQQQQQPQIPGAAGVVG 189
            + L  R++ L SIF          +   +  AA A   EA+ QQ QQQ+PQ PG++    
Sbjct: 1055 VRLDYRISCLLSIFKR--------EFDESEVAASAASNEASQQQSQQQEPQTPGSSN--- 1103

Query: 190  ANIPPVNNGDPPAQAAAAQAAAAEEQARIAANASRLRAMPLNDTPVDD 333
                P+++ +  A  AAA AA    Q  I   +  ++A  + D    D
Sbjct: 1104 -ETDPLDSAESVAAGAAAAAATTARQKNIDLESIGVQAEGIFDCERSD 1150



EST assemble image


clone accession position
1 LCL085d11_r AV630867 1 219
2 MXL100a11_r BP098843 1 346




Chlamydomonas reinhardtii
Kazusa DNA Research Institute