KCC003296A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003296A_C01 KCC003296A_c01
CTTGACTCAACTCACACGGACAGCAAGCAATAGCAACCTGCCCTAGGGGCACTGACTTCT
TATTATGAGCGCCATGGAGCGGCAAACAAGCGTCGATGACCTTTTAGGCGGCTTTTGGAG
ACTAGGCCAGGCTGGGATGGGCCGCACTGACTCGGAGGCGGCATTTCAGGAGTTTCTGAA
GCGTATACCGTCAACCACGAACCTCGCGGCTGCTGTCGTGGAAAGCTCGCAGGGAGGGGC
GTCAGCCTCGCAGCCCGCAGGCGCTTCTTCCTCGCTACCAGCCGGAGTGCTTTCAGATGT
AGTAACCTCAGCAGCAGCTGCGGTGGGTGGCATTCCTCGGGTGCCGTCGCTGGAGCTACT
TCGCCAGCTCGTGCTTCCTTCATCGGGCGCGATGCCTGCAGTAACAGCACAAGGGCTTGC
GCCAGCTTCTGCTGTAAAAGTGGAAACAGCTGCTGCTGCGCCACCGGCTCCAGGCGCACC
AGCCGCGCCCAACTCGGCCTTCAGGCTGCCCGAGGCGGTGGAAGTGCTCAAAGGGGCTGT
GGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003296A_C01 KCC003296A_c01
         (544 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83283.1| early nodulin 75 precursor-like protein [Oryza s...    50  3e-05
emb|CAB46679.1| proteophosphoglycan [Leishmania major]                 48  1e-04
gb|AAD31492.1|AF138799_1 serum opacity factor precursor [Strepto...    48  1e-04
gb|AAA28967.1| tropomyosin isoform 34 (9B)                             46  3e-04
dbj|BAB03182.1| gene_id:T19N8.14~unknown protein [Arabidopsis th...    46  4e-04

>dbj|BAC83283.1| early nodulin 75 precursor-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 190

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 38/133 (28%), Positives = 57/133 (42%)
 Frame = +2

Query: 101 LLGGFWRLGQAGMGRTDSEAAFQEFLKRIPSTTNLAAAVVESSQGGASASQPAGASSSLP 280
           LL G  R  QA     D+       +  +P+ T      + +    A+   P  A   +P
Sbjct: 17  LLAGSSRSCQAARHLADATPPAAVPVPTVPAVTLPPMPAIPAVP--AATLPPMPAVPIVP 74

Query: 281 AGVLSDVVTSAAAAVGGIPRVPSLELLRQLVLPSSGAMPAVTAQGLAPASAVKVETAAAA 460
              L  +      A+  +P VP++  +  + +P   A+PAV A  L P  AV    AA+ 
Sbjct: 75  NTALPPMPAVPKVALPPMPAVPAVPTVPAVTVPPMPAVPAVPAATLPPMPAVPAVPAASL 134

Query: 461 PPAPGAPAAPNSA 499
           PP P  PA PN+A
Sbjct: 135 PPMPAMPAVPNAA 147

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 1/101 (0%)
 Frame = +2

Query: 239 ASASQPAGAS-SSLPAGVLSDVVTSAAAAVGGIPRVPSLELLRQLVLPSSGAMPAVTAQG 415
           A A+ PA     ++PA  L  +    A     +P +P++ ++    LP   A+P V    
Sbjct: 32  ADATPPAAVPVPTVPAVTLPPMPAIPAVPAATLPPMPAVPIVPNTALPPMPAVPKVALPP 91

Query: 416 LAPASAVKVETAAAAPPAPGAPAAPNSAFRLPEAVEVLKGA 538
           +    AV    A   PP P  PA P +      AV  +  A
Sbjct: 92  MPAVPAVPTVPAVTVPPMPAVPAVPAATLPPMPAVPAVPAA 132

 Score = 40.0 bits (92), Expect = 0.020
 Identities = 27/87 (31%), Positives = 38/87 (43%)
 Frame = +2

Query: 281 AGVLSDVVTSAAAAVGGIPRVPSLELLRQLVLPSSGAMPAVTAQGLAPASAVKVETAAAA 460
           +G+L+ V+  A    G      +   L     P++  +P V A  L P  A+    AA  
Sbjct: 5   SGLLATVLAMAVLLAGSSRSCQAARHLADATPPAAVPVPTVPAVTLPPMPAIPAVPAATL 64

Query: 461 PPAPGAPAAPNSAFRLPEAVEVLKGAV 541
           PP P  P  PN+A  LP    V K A+
Sbjct: 65  PPMPAVPIVPNTA--LPPMPAVPKVAL 89

 Score = 40.0 bits (92), Expect = 0.020
 Identities = 25/97 (25%), Positives = 42/97 (42%)
 Frame = +2

Query: 254 PAGASSSLPAGVLSDVVTSAAAAVGGIPRVPSLELLRQLVLPSSGAMPAVTAQGLAPASA 433
           P  A  ++PA  L  +          +P +P++  +    +P+  A+P V A  + P  A
Sbjct: 52  PMPAIPAVPAATLPPMPAVPIVPNTALPPMPAVPKVALPPMPAVPAVPTVPAVTVPPMPA 111

Query: 434 VKVETAAAAPPAPGAPAAPNSAFRLPEAVEVLKGAVV 544
           V    AA  PP P  PA P ++     A+  +  A +
Sbjct: 112 VPAVPAATLPPMPAVPAVPAASLPPMPAMPAVPNAAL 148

 Score = 38.1 bits (87), Expect = 0.076
 Identities = 28/99 (28%), Positives = 39/99 (39%)
 Frame = +2

Query: 185 IPSTTNLAAAVVESSQGGASASQPAGASSSLPAGVLSDVVTSAAAAVGGIPRVPSLELLR 364
           +P+ T      V      A    PA    +LP       V +  A    +P +P++  + 
Sbjct: 59  VPAATLPPMPAVPIVPNTALPPMPAVPKVALPPMPAVPAVPTVPAVT--VPPMPAVPAVP 116

Query: 365 QLVLPSSGAMPAVTAQGLAPASAVKVETAAAAPPAPGAP 481
              LP   A+PAV A  L P  A+     AA PP P  P
Sbjct: 117 AATLPPMPAVPAVPAASLPPMPAMPAVPNAALPPMPAVP 155

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
 Frame = +2

Query: 185 IPSTTNLAAAVVESSQGGASASQPA-GASSSLPAGVLSDVVTSAAAAVGGIPRVPSLELL 361
           +P   N A   + +    A    PA  A  ++PA  +  +    A     +P +P++  +
Sbjct: 70  VPIVPNTALPPMPAVPKVALPPMPAVPAVPTVPAVTVPPMPAVPAVPAATLPPMPAVPAV 129

Query: 362 RQLVLPSSGAMPAVTAQGLAPASAVKVETAAAAPPAPGAPAAP 490
               LP   AMPAV    L P  AV   T    PP P  PA P
Sbjct: 130 PAASLPPMPAMPAVPNAALPPMPAVPKVT---LPPMPSMPAVP 169

 Score = 34.7 bits (78), Expect = 0.84
 Identities = 24/86 (27%), Positives = 35/86 (39%), Gaps = 4/86 (4%)
 Frame = +2

Query: 254 PAGASSSLPAGVLSDVVTSAAAAVGGIPRVPSLELLRQLVLPSSGAMPAVTAQGLAPASA 433
           P  A  ++PA  L  +    A     +P +P++  +    LP   A+P VT   L P  +
Sbjct: 108 PMPAVPAVPAATLPPMPAVPAVPAASLPPMPAMPAVPNAALPPMPAVPKVT---LPPMPS 164

Query: 434 VKVETAAAAPPAPGAP----AAPNSA 499
           +        PP P  P    A P SA
Sbjct: 165 MPAVPKVTLPPMPSVPMPFLAPPPSA 190

>emb|CAB46679.1| proteophosphoglycan [Leishmania major]
          Length = 873

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 43/160 (26%), Positives = 74/160 (45%), Gaps = 9/160 (5%)
 Frame = -2

Query: 543  TTAPLSTSTA--SGSLKAELGAAGAPGAGGAAAAVSTFTAEAGASPCAV---TAGIAPDE 379
            ++AP S+S+A  + S  A   ++ AP A  ++A  S+ ++   AS  +    ++  AP  
Sbjct: 691  SSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSA 750

Query: 378  GSTSWRSSSSD----GTRGMPPTAAAAEVTTSESTPAGSEEEAPAGCEADAPPCELSTTA 211
             S+S  SSSS      +   P ++++A   +S S P+ S   AP+   + AP    S+  
Sbjct: 751  SSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 810

Query: 210  AARFVVDGIRFRNS*NAASESVRPIPAWPSLQKPPKRSST 91
            +A          +S +A S S    P+  S   P   SS+
Sbjct: 811  SA----------SSSSAPSSSSSSAPSASSSSAPSSSSSS 840

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 10/161 (6%)
 Frame = -2

Query: 543  TTAPLSTS---TASGSLKAELGAAGAPGAGGAAAAVSTFTA--EAGASPCAVTAGIAPDE 379
            ++AP S+S   +AS S      ++ AP A  ++A  S+ ++   A +S    ++  AP  
Sbjct: 644  SSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSA 703

Query: 378  GSTSWRSSSSDGTRGMPPTA-----AAAEVTTSESTPAGSEEEAPAGCEADAPPCELSTT 214
             S+S  SSSS        +A     ++A   +S S P+ S   AP+   + AP    S  
Sbjct: 704  SSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP 763

Query: 213  AAARFVVDGIRFRNS*NAASESVRPIPAWPSLQKPPKRSST 91
            +A+          +S +A S S    P+  S   P   SS+
Sbjct: 764  SASSSSAPS----SSSSAPSASSSSAPSSSSSSAPSASSSS 800

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
 Frame = -2

Query: 540 TAPLSTSTASGSLKAELGAAGAPGAGGAAAAVSTFTAEAGASPCAVTAGI--APDEGSTS 367
           +A  S++++S S      ++ AP +  +A + S+ +A + +S  A +A    AP   S+S
Sbjct: 625 SASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSS 684

Query: 366 WRSSSSDG---TRGMPPTAAAAEV-TTSESTPAGSEEEAPAGCEADAPPCELSTTAAA 205
             S+SS     +    P+A+++   ++S S P+ S   AP+   + AP    S+  ++
Sbjct: 685 APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSS 742

 Score = 36.6 bits (83), Expect = 0.22
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
 Frame = +2

Query: 188  PSTTNLAAAVVESSQGGASASQPAGASSSLPAGVLSDV--VTSAAAAVGGIPRVPSLELL 361
            PS+++ A +   SS   +S+S P+ +SSS P+   S     +S++A        PS    
Sbjct: 694  PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPS---- 749

Query: 362  RQLVLPSSGAMPAVTAQGLAPASAVKVETAAAAPPAPGAPAAPNSAFRLPEA 517
                  SS + P+ ++   + +S+    ++++AP A  + A  +S+   P A
Sbjct: 750  -----ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSA 796

 Score = 35.4 bits (80), Expect = 0.49
 Identities = 28/118 (23%), Positives = 51/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 170 EFLKRIPSTTNLAAAVVESSQGGASASQPA--GASSSLPAGVLSDVVTSAAAAVGGIPRV 343
           E L    +T N      ESS    SAS  +   +SSS P+   S   +S+++A       
Sbjct: 601 ELLASDCATENACKPETESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSS 660

Query: 344 PSLELLRQLVLPSSGAMPAVTAQGLAPASAVKVETAAAAPPAPGAPAAPNSAFRLPEA 517
                       SS + P+ ++     AS+    +++++ P+  + +AP+S+   P A
Sbjct: 661 APSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSA 718

 Score = 35.4 bits (80), Expect = 0.49
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
 Frame = +2

Query: 188  PSTTNLAAAVVESSQGGASASQPAGASSSLPAGVLSDV--VTSAAAAVGGIPRVPSL--- 352
            PS+++ A +   SS   +S+S P+ +SSS P+   S     +S++A        PS    
Sbjct: 756  PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 815

Query: 353  ----ELLRQLVLPSSGAMPAVTAQGLAPASAVKVETAAAAPPAPGAPAAPNSAFRLP 511
                         SS + P+ ++     AS+    +++++ P+  + +AP+S+   P
Sbjct: 816  SAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAP 872

 Score = 33.5 bits (75), Expect = 1.9
 Identities = 32/124 (25%), Positives = 55/124 (43%), Gaps = 6/124 (4%)
 Frame = -2

Query: 444 STFTAEAGASPCAVTAGIAPDEGSTSWRSSSSDGTRGMPPTAAAAEV--TTSESTPAGSE 271
           S+    A +S  + ++  AP   S+S  SSSS       P+A+++    ++S S P+ S 
Sbjct: 620 SSSAPSASSSSASSSSSSAPSASSSSAPSSSSSA-----PSASSSSAPSSSSSSAPSASS 674

Query: 270 EEAPAGCEADAPPCEL----STTAAARFVVDGIRFRNS*NAASESVRPIPAWPSLQKPPK 103
             AP+   + AP        S++++A          +S +A S S    P+  S   P  
Sbjct: 675 SSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSA 734

Query: 102 RSST 91
            SS+
Sbjct: 735 SSSS 738

>gb|AAD31492.1|AF138799_1 serum opacity factor precursor [Streptococcus pyogenes]
          Length = 245

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 31/96 (32%), Positives = 53/96 (54%), Gaps = 1/96 (1%)
 Frame = -2

Query: 543 TTAPLSTSTASGSLKAELGAAGAPGAGGAAAAVSTFTAEAGASPCAVTA-GIAPDEGSTS 367
           T    +TST++G+ +     AG+ GA   + A S  +  +G +P A T  G A   G+T 
Sbjct: 18  TETSATTSTSTGTSETAASEAGS-GASDVSIASSGGSQSSGTTPSATTGTGEAAGSGTTV 76

Query: 366 WRSSSSDGTRGMPPTAAAAEVTTSESTPAGSEEEAP 259
             +++++G     P AA+A  T+S S+ + SE++AP
Sbjct: 77  ATATTTNGGTQSTPAAASASSTSSTSSTSSSEDKAP 112

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 3/95 (3%)
 Frame = -2

Query: 531 LSTSTASGSLKAELGAAGAPGAGGAAAA---VSTFTAEAGASPCAVTAGIAPDEGSTSWR 361
           +S +++ GS  +    +   G G AA +   V+T T   G +     A  A    STS  
Sbjct: 45  VSIASSGGSQSSGTTPSATTGTGEAAGSGTTVATATTTNGGTQSTPAAASASSTSSTSST 104

Query: 360 SSSSDGTRGMPPTAAAAEVTTSESTPAGSEEEAPA 256
           SSS D       T  ++    S S   GS +EA A
Sbjct: 105 SSSEDKAPKAASTTLSSATVASPSN--GSNQEASA 137

>gb|AAA28967.1| tropomyosin isoform 34 (9B)
          Length = 510

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 37/110 (33%), Positives = 44/110 (39%)
 Frame = -2

Query: 534 PLSTSTASGSLKAELGAAGAPGAGGAAAAVSTFTAEAGASPCAVTAGIAPDEGSTSWRSS 355
           P   + A G+  AE    GAP A GAA A     AE GA P       AP EG  +    
Sbjct: 414 PAEAAPAEGAPPAE----GAPAAEGAAPAEGAPAAE-GAPPAEGAPAPAPAEGEAA---- 464

Query: 354 SSDGTRGMPPTAAAAEVTTSESTPAGSEEEAPAGCEADAPPCELSTTAAA 205
                   P  AA  +   +   P    E APA  E +APP E +  A A
Sbjct: 465 -------PPAPAAEGDAAAAPPPPPAEGEAAPAPAEGEAPPAEAAPAAEA 507

>dbj|BAB03182.1| gene_id:T19N8.14~unknown protein [Arabidopsis thaliana]
          Length = 342

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 38/110 (34%), Positives = 50/110 (44%), Gaps = 5/110 (4%)
 Frame = -2

Query: 522 STASGSLKAELGAA---GAPGAGGAAAAVSTFTAEAGASPCAVTAG--IAPDEGSTSWRS 358
           S+ASGS  A  G     G   AGG+ AA  T  + AG +    TAG   A   G+ +  +
Sbjct: 169 SSASGSDTAAGGTTATGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAGGT 228

Query: 357 SSSDGTRGMPPTAAAAEVTTSESTPAGSEEEAPAGCEADAPPCELSTTAA 208
           ++SD       TA+ A      +T AG+   A AG  A A      TTAA
Sbjct: 229 TASDAGTAAGTTASGAGTAAGGTTAAGAGAAAGAGAAAGAGAAAGGTTAA 278

 Score = 32.3 bits (72), Expect = 4.2
 Identities = 25/81 (30%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
 Frame = -2

Query: 540 TAPLSTSTASGSLKAELGAA--GAPGAGGAAAAVSTFTAEAGASPCAVTA--GIAPDEGS 373
           T      TA+G+  +  G A  G   AG  AAA +   A AGA+    TA  G++   GS
Sbjct: 228 TTASDAGTAAGTTASGAGTAAGGTTAAGAGAAAGAGAAAGAGAAAGGTTAAGGVSGSYGS 287

Query: 372 TSWRSSSSDGTRGMPPTAAAA 310
           +   +S+++G      T+A +
Sbjct: 288 SGGSASNTNGGTSSCGTSACS 308



EST assemble image


clone accession position
1 LCL084b10_r AV630779 1 448
2 LCL079a08_r AV630450 1 312
3 MXL019d07_r BP094195 60 544




Chlamydomonas reinhardtii
Kazusa DNA Research Institute