Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003288A_C01 KCC003288A_c01
(365 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP06858.1| hypothetical protein [Oryza sativa (japonica cult... 34 1e-04
ref|NP_565747.1| spliceosome associated protein-family [Arabidop... 33 1e-04
pir||T02559 probable spliceosome-associated protein SAP62 homolo... 33 1e-04
ref|NP_596585.1| similar to Mouse SF3A spliceosome complex prote... 34 0.59
dbj|BAC41225.1| hypothetical protein [Macaca fascicularis] 33 1.0
>gb|AAP06858.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 351
Score = 33.9 bits (76), Expect(2) = 1e-04
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 217 REHGAKPGSRGPASAQNEAI 276
RE G+KPGS G ASAQNEAI
Sbjct: 3 REWGSKPGSGGAASAQNEAI 22
Score = 31.6 bits (70), Expect(2) = 1e-04
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 303 LALETIDLTKDPYLCANNWG 362
LALETIDL KDPY N+ G
Sbjct: 31 LALETIDLAKDPYFMRNHLG 50
>ref|NP_565747.1| spliceosome associated protein-family [Arabidopsis thaliana]
gi|15450715|gb|AAK96629.1| At2g32600/T26B15.16
[Arabidopsis thaliana] gi|20197236|gb|AAC25942.2|
putative spliceosome associated protein [Arabidopsis
thaliana] gi|20466089|gb|AAM19966.1| At2g32600/T26B15.16
[Arabidopsis thaliana]
Length = 277
Score = 33.1 bits (74), Expect(2) = 1e-04
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = +3
Query: 303 LALETIDLTKDPYLCANNWGS 365
LALETIDL KDPY N+ GS
Sbjct: 31 LALETIDLAKDPYFMRNHLGS 51
Score = 32.3 bits (72), Expect(2) = 1e-04
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 217 REHGAKPGSRGPASAQNEAI 276
RE G+KPGS G AS QNEAI
Sbjct: 3 REWGSKPGSGGAASGQNEAI 22
>pir||T02559 probable spliceosome-associated protein SAP62 homolog T26B15.16 -
Arabidopsis thaliana
Length = 275
Score = 33.1 bits (74), Expect(2) = 1e-04
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = +3
Query: 303 LALETIDLTKDPYLCANNWGS 365
LALETIDL KDPY N+ GS
Sbjct: 31 LALETIDLAKDPYFMRNHLGS 51
Score = 32.3 bits (72), Expect(2) = 1e-04
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 217 REHGAKPGSRGPASAQNEAI 276
RE G+KPGS G AS QNEAI
Sbjct: 3 REWGSKPGSGGAASGQNEAI 22
>ref|NP_596585.1| similar to Mouse SF3A spliceosome complex protein SAP62
[Schizosaccharomyces pombe] gi|11359059|pir||T50349
homolog to Mouse SF3A spliceosome complex protein SAP62
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|7106070|emb|CAB76041.1| SPBC21C3.05
[Schizosaccharomyces pombe]
Length = 217
Score = 33.9 bits (76), Expect = 0.59
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 303 LALETIDLTKDPYLCANNWGS 365
LALETIDL+KDPYL N+ G+
Sbjct: 33 LALETIDLSKDPYLMKNHLGT 53
>dbj|BAC41225.1| hypothetical protein [Macaca fascicularis]
Length = 79
Score = 33.1 bits (74), Expect = 1.0
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 200 CHSSRLA-SMAPSQAQEARPLRRMRRFDRRERLRRPRAGDDRPHEGPLFMRKQ 355
C+S+ LA S+A S ARP +R++R + R PRA PHE L R+Q
Sbjct: 2 CNSAALAVSVALSAVSPARPPQRLQRLRESGQQRVPRA----PHEPDLLQRQQ 50
