KCC003261A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003261A_C01 KCC003261A_c01
accaaattcagctcgctcatacgcgggcaCCCGACACAAGGTCGACCACAAAGTTTCGAT
TCCGCACGAGGGCATTCGGAGCCCTTCATTCTTTTATGCACGGCGTCAAACCAGGCAGCC
CGCAGCGTAGCTCCCGTTGCTCGACATCAGCCAATTCTCCTACGCCAAGCAGGCTCCGCG
CAGCGCCGTCGGCGCCGTCAGTCCCTTCGCACGTCGCTGCTCCGCGTCGCAGCACAATGG
TGCTCGGAATTAAGACCGTCGCTAGCTTCGTGTCGAAGCCGTTCCGGCGCGGCGGCAAGA
GCTCGCGACTGGAGGCGTCGTCGCGCGAGCCCATGACGCAAGCGGAGATTGAGGACCTGG
TGCTGAAGTTGAACAAGATCGAGGCGGTCAAGTTCGGCGAGTTCAAGCTGAAGAGCGGGC
TCATCTCGCCCGTGTACGTGGACCTTCGCGTCATCGTGTCCTACCCCGATGTGCTGGAGC
AGGTGTCCCGCATGATGTGGAACGCCGTGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003261A_C01 KCC003261A_c01
         (512 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF86340.1|AF277455_1 UMP synthase [Nicotiana plumbaginifolia]      71  7e-12
ref|NP_680130.1| UMP synthase {Arabidopsis thaliana} -related gi...    69  5e-11
pir||S46440 bifunctional UMP synthase [validated] - Arabidopsis ...    69  5e-11
sp|P09556|PYR5_DICDI Uridine 5'-monophosphate synthase (UMP synt...    69  5e-11
gb|AAH45440.1| Unknown (protein for MGC:55723) [Danio rerio] gi|...    67  1e-10

>gb|AAF86340.1|AF277455_1 UMP synthase [Nicotiana plumbaginifolia]
          Length = 477

 Score = 71.2 bits (173), Expect = 7e-12
 Identities = 31/55 (56%), Positives = 44/55 (79%)
 Frame = +3

Query: 333 MTQAEIEDLVLKLNKIEAVKFGEFKLKSGLISPVYVDLRVIVSYPDVLEQVSRMM 497
           M    +E ++L+L+ I AVKFGEFKLKSG+ SP+Y+DLR+IVSYP +L Q+S+ +
Sbjct: 1   MVSDTMESIILQLHDISAVKFGEFKLKSGISSPIYIDLRLIVSYPSILRQISQTL 55

>ref|NP_680130.1| UMP synthase {Arabidopsis thaliana} -related
           gi|21431826|sp|Q42586|PYR5_ARATH Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (OPRtase); Orotidine
           5'-phosphate decarboxylase (OMPdecase)]
           gi|11258341|pir||T47606 UMP synthase - Arabidopsis
           thaliana gi|7258350|emb|CAB77567.1| UMP synthase
           [Arabidopsis thaliana] gi|22655298|gb|AAM98239.1|
           unknown protein [Arabidopsis thaliana]
           gi|30387581|gb|AAP31956.1| At3g54470 [Arabidopsis
           thaliana]
          Length = 476

 Score = 68.6 bits (166), Expect = 5e-11
 Identities = 31/50 (62%), Positives = 43/50 (86%)
 Frame = +3

Query: 348 IEDLVLKLNKIEAVKFGEFKLKSGLISPVYVDLRVIVSYPDVLEQVSRMM 497
           +E L+L+L++I AVKFG FKLKSG+ SPVY+DLR+IVSYP +L Q+S+ +
Sbjct: 4   MEALILQLHEIGAVKFGNFKLKSGIFSPVYIDLRLIVSYPSLLTQISQTL 53

>pir||S46440 bifunctional UMP synthase [validated] - Arabidopsis thaliana
           gi|443818|emb|CAA50686.1| pyrE-F [Arabidopsis thaliana]
           gi|14582292|gb|AAK69440.1|AF276887_1 UMP synthase
           [Arabidopsis thaliana]
          Length = 476

 Score = 68.6 bits (166), Expect = 5e-11
 Identities = 31/50 (62%), Positives = 43/50 (86%)
 Frame = +3

Query: 348 IEDLVLKLNKIEAVKFGEFKLKSGLISPVYVDLRVIVSYPDVLEQVSRMM 497
           +E L+L+L++I AVKFG FKLKSG+ SPVY+DLR+IVSYP +L Q+S+ +
Sbjct: 4   MEALILQLHEIGAVKFGNFKLKSGIFSPVYIDLRLIVSYPSLLTQISQTL 53

>sp|P09556|PYR5_DICDI Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate
           phosphoribosyltransferase (OPRtase); Orotidine
           5'-phosphate decarboxylase (OMPdecase)]
           gi|84132|pir||S03826 UMP synthase - slime mold
           (Dictyostelium discoideum) gi|7333|emb|CAA30443.1|
           unnamed protein product [Dictyostelium discoideum]
          Length = 478

 Score = 68.6 bits (166), Expect = 5e-11
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +3

Query: 348 IEDLVLKLNKIEAVKFGEFKLKSGLISPVYVDLRVIVSYPDVLEQVSRMMWNAV 509
           I++LVLKL K+ A+K GEFKLKSG+ISP+Y+DLRV VS P +L  ++ MM+  V
Sbjct: 3   IKELVLKLMKLMAIKLGEFKLKSGIISPIYIDLRVTVSSPPLLAAIAEMMYQKV 56

>gb|AAH45440.1| Unknown (protein for MGC:55723) [Danio rerio]
           gi|32822709|gb|AAH55000.1| Unknown (protein for
           MGC:55702) [Danio rerio]
          Length = 305

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 31/55 (56%), Positives = 43/55 (77%)
 Frame = +3

Query: 333 MTQAEIEDLVLKLNKIEAVKFGEFKLKSGLISPVYVDLRVIVSYPDVLEQVSRMM 497
           M    ++ L+LKL+ I+AVKFG FKLKSGL SP+Y DLRVIVS+P ++ QV+ ++
Sbjct: 1   MDDTSLDSLILKLHDIQAVKFGTFKLKSGLSSPIYFDLRVIVSHPALMNQVADLL 55



EST assemble image


clone accession position
1 LCL100h03_r AV631854 1 176
2 LCL061e11_r AV629590 30 512




Chlamydomonas reinhardtii
Kazusa DNA Research Institute