KCC003256A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003256A_C01 KCC003256A_c01
CAACAGTATTTGGTATAACGGGAAGCGGTCGGTTCTACCTAAAGTTTACCTACGTCTAGA
GACATCTTCTACTATTCCTTAATAAGTGCGCCTTGTTCACAAGGAATTTTCTGCTGTTGC
ACTTCGCACTAACAGCAAACCCGAGTGCCCCCGGAGCAGCTTCATCGGCAGAAGATGGCA
CCGAAGGCGGACGCGAAGAGCAAAATCCCCATCACGGTGGTGACGGGGTTCCTGGGCGCC
GGCAAGACCACCCTGGTGAACCACATCTTGACCGCCAACCACGGCAAGAAGATTGCTGTG
ATTGAGAATGAGTTTGGCGAGGTGGGCATTGATGATGCGCTGGTGATGGAGAGCAAGGAG
GAGATCTTTGAGATGAACAACGGCTGCGTGTGCTGCACGGTGCGCGGCGACCTCATCCGC
ATCCTAAACAAGCTCATCAAGCGCAAGGGCAAGTTCGACGCCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003256A_C01 KCC003256A_c01
         (464 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00010448.1| COG0523: Putative GTPases (G3E family) [Rhodo...   144  6e-34
ref|NP_923480.1| hypothetical protein glr0534 [Gloeobacter viola...   142  2e-33
ref|NP_774408.1| bll7768 [Bradyrhizobium japonicum] gi|27356052|...   141  4e-33
ref|NP_485791.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   141  4e-33
ref|NP_105867.1| hypothetical protein [Mesorhizobium loti] gi|14...   140  5e-33

>ref|ZP_00010448.1| COG0523: Putative GTPases (G3E family) [Rhodopseudomonas palustris]
          Length = 362

 Score =  144 bits (362), Expect = 6e-34
 Identities = 67/90 (74%), Positives = 80/90 (88%)
 Frame = +1

Query: 193 AKSKIPITVVTGFLGAGKTTLVNHILTANHGKKIAVIENEFGEVGIDDALVMESKEEIFE 372
           A SKIP+TV+TG+LGAGKTTL+N IL+ NHGKK AVI NEFGE+GID+ L++ + EE+FE
Sbjct: 18  AASKIPVTVLTGYLGAGKTTLLNRILSENHGKKYAVIVNEFGEIGIDNDLIIGADEEVFE 77

Query: 373 MNNGCVCCTVRGDLIRILNKLIKRKGKFDA 462
           MNNGCVCCTVRGDL+RIL  L+KRKGKFDA
Sbjct: 78  MNNGCVCCTVRGDLVRILAGLMKRKGKFDA 107

>ref|NP_923480.1| hypothetical protein glr0534 [Gloeobacter violaceus]
           gi|35211095|dbj|BAC88475.1| glr0534 [Gloeobacter
           violaceus]
          Length = 449

 Score =  142 bits (358), Expect = 2e-33
 Identities = 63/87 (72%), Positives = 79/87 (90%)
 Frame = +1

Query: 199 SKIPITVVTGFLGAGKTTLVNHILTANHGKKIAVIENEFGEVGIDDALVMESKEEIFEMN 378
           +++P+TV+TGFLG+GKTTL+N ILT  HGK+IAVIENEFGE+GID ALV+ ++EEIFEMN
Sbjct: 4   NRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIFEMN 63

Query: 379 NGCVCCTVRGDLIRILNKLIKRKGKFD 459
           NGC+CCTVRGDLIRI+  L++RK KFD
Sbjct: 64  NGCICCTVRGDLIRIIGSLMRRKDKFD 90

>ref|NP_774408.1| bll7768 [Bradyrhizobium japonicum] gi|27356052|dbj|BAC53033.1|
           bll7768 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score =  141 bits (355), Expect = 4e-33
 Identities = 63/87 (72%), Positives = 79/87 (90%)
 Frame = +1

Query: 202 KIPITVVTGFLGAGKTTLVNHILTANHGKKIAVIENEFGEVGIDDALVMESKEEIFEMNN 381
           KIP+TV+TG+LGAGKTTL+N IL+ NHGKK AVI NEFGE+GID+ L++ + EE+FEMNN
Sbjct: 8   KIPVTVLTGYLGAGKTTLLNRILSENHGKKYAVIVNEFGEIGIDNDLIIGADEEVFEMNN 67

Query: 382 GCVCCTVRGDLIRILNKLIKRKGKFDA 462
           GC+CCTVRGDL+RI++ L+KRKGKFDA
Sbjct: 68  GCICCTVRGDLVRIMDGLMKRKGKFDA 94

>ref|NP_485791.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25318042|pir||AI2024
           hypothetical protein all1751 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17130841|dbj|BAB73450.1|
           ORF_ID:all1751~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 323

 Score =  141 bits (355), Expect = 4e-33
 Identities = 63/85 (74%), Positives = 78/85 (91%)
 Frame = +1

Query: 205 IPITVVTGFLGAGKTTLVNHILTANHGKKIAVIENEFGEVGIDDALVMESKEEIFEMNNG 384
           +P+TV+TG+LGAGKTTL+NHILT  HGKK+AVI NEFGEVGID+ LV+++ EEIFEMNNG
Sbjct: 10  VPVTVLTGYLGAGKTTLLNHILTYEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNG 69

Query: 385 CVCCTVRGDLIRILNKLIKRKGKFD 459
           C+CCTVRGDLIRI++ L+KR+ KFD
Sbjct: 70  CICCTVRGDLIRIISNLMKRRDKFD 94

>ref|NP_105867.1| hypothetical protein [Mesorhizobium loti]
           gi|14025051|dbj|BAB51653.1| hypothetical protein
           [Mesorhizobium loti]
          Length = 435

 Score =  140 bits (354), Expect = 5e-33
 Identities = 65/101 (64%), Positives = 87/101 (85%)
 Frame = +1

Query: 160 LHRQKMAPKADAKSKIPITVVTGFLGAGKTTLVNHILTANHGKKIAVIENEFGEVGIDDA 339
           + RQ M+   DA+++IP+TV+TG+LGAGKTTL+N IL+ NHG++ AVI NEFGE+GID+ 
Sbjct: 78  ISRQAMS---DAQTQIPVTVLTGYLGAGKTTLLNRILSENHGRRYAVIVNEFGEIGIDND 134

Query: 340 LVMESKEEIFEMNNGCVCCTVRGDLIRILNKLIKRKGKFDA 462
           L++ES EEI+EMNNGCVCCTVRGDLIR++  L++R G+FDA
Sbjct: 135 LIVESDEEIYEMNNGCVCCTVRGDLIRVVEGLMRRPGRFDA 175



EST assemble image


clone accession position
1 MXL072a07_r BP097221 1 474
2 LCL059c11_r AV629468 100 569




Chlamydomonas reinhardtii
Kazusa DNA Research Institute