KCC003252A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003252A_C01 KCC003252A_c01
gggTGGTAAACAGTTGCACAAATAAGGACTCCGAGGACATTTGTACGTCTGACCTTTACG
CAAGGACAAATAACGCAGCATGCGCGCCCAATTTGGCACTGGATCCAGCTCGTCCTGCTG
CTCGCCGCGACCTGCTGTTCGCGTCTCAGGGCGTCAGCCCTCCTGTTCAACATCAGCACT
CAGTCCAGTGTCCTCACACCGCCTGGATGACGCCGCAACTGGCGTTCGGCTCAGCTCCCA
CACCCGCACCATACCTTACCACACCACACCACACCACACCACCTACTCCGACTGCAGGAC
TCCACATTACCGCCCACCAGCTGCCGTCGCCGCCATTACCACTACGTGGCCGCCTTCGCG
CCCGCCTCCGTCGTGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003252A_C01 KCC003252A_c01
         (377 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO16994.1| Hypothetical protein [Oryza sativa (japonica cult...    40  0.006
pir||T03023 calcium-dependent protein kinase-related protein kin...    40  0.011
gb|AAG01179.1|AF289237_1 calcium/calmodulin dependent protein ki...    40  0.011
gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15...    39  0.018
ref|XP_286896.1| hypothetical protein XP_286896 [Mus musculus]         38  0.031

>gb|AAO16994.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 90  NLALDPARPAARRDLLFASQGVSPPVQHQHSVQCPHTAWMTPQLAFGS-APTPAPYLTTP 266
           NLA   A+P A+   L      + P  H  ++  PH     P +A GS   +P P+   P
Sbjct: 135 NLASLGAKPRAQPPHLLRPSPPATPGPHAPALPSPHHHQPAPAIAVGSRGVSPVPWYYHP 194

Query: 267 HHTTPPTPTAGLHITAH 317
             T PP P    H  AH
Sbjct: 195 STTPPPPPPPAAHYAAH 211

>pir||T03023 calcium-dependent protein kinase-related protein kinase - maize
           gi|1313909|dbj|BAA12692.1| CDPK-related protein kinase
           [Zea mays]
          Length = 607

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
 Frame = +3

Query: 84  APNLALDPARPAARRDLLFASQGVSPPVQHQHSVQCPHTAWMTPQLAFGSAPTPAPYLTT 263
           AP     PA P  R+       G + PV HQ +     TAW +P  A G++P PA    +
Sbjct: 33  APTPPQQPATPGRRKS------GSATPVHHQAAT----TAWPSPYPAGGASPLPAGVSPS 82

Query: 264 PHHTTP--------PTPTAGLHITA 314
           P  +TP        P P+   HI A
Sbjct: 83  PARSTPRRFFKRPFPPPSPAKHIKA 107

>gb|AAG01179.1|AF289237_1 calcium/calmodulin dependent protein kinase MCK2 [Zea mays]
          Length = 607

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
 Frame = +3

Query: 84  APNLALDPARPAARRDLLFASQGVSPPVQHQHSVQCPHTAWMTPQLAFGSAPTPAPYLTT 263
           AP     PA P  R+       G + PV HQ +     TAW +P  A G++P PA    +
Sbjct: 33  APTPPQQPATPGRRKS------GSATPVHHQAAT----TAWPSPYPAGGASPLPAGVSPS 82

Query: 264 PHHTTP--------PTPTAGLHITA 314
           P  +TP        P P+   HI A
Sbjct: 83  PARSTPRRFFKRPFPPPSPAKHIKA 107

>gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15]
           gi|18025470|gb|AAK95414.1| EBNA-2 [cercopithicine
           herpesvirus 15]
          Length = 605

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
 Frame = +3

Query: 105 PARPAARRDLLFASQGVSPPVQHQHSVQCPHTAWMTPQLAFGSAPTPAPYLTTPHHTTPP 284
           P RP+  +    A  G SP  Q     Q P  A   P      AP PAP LT+P H  PP
Sbjct: 285 PWRPSPVQAPPRAPWGPSPTKQ-----QAPPPAPWGPSPTKQQAPPPAPPLTSPEHPDPP 339

Query: 285 T----PTAGLHITAHQLPSPP 335
                PT   HI  H L   P
Sbjct: 340 QSTPHPTPPKHIPVHPLTHAP 360

>ref|XP_286896.1| hypothetical protein XP_286896 [Mus musculus]
          Length = 92

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 236 SHTRTIPYHTTPHHTTYSDCRTPHY 310
           +HT TIP+HTTPHHTT     TPH+
Sbjct: 31  THTHTIPHHTTPHHTTPHHI-TPHH 54

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 244 PHHTLPHHTTPHHL 285
           PHHT PHHTTPHH+
Sbjct: 37  PHHTTPHHTTPHHI 50



EST assemble image


clone accession position
1 LCL057g08_r AV629388 1 411
2 LCL082a12_r AV630650 38 381




Chlamydomonas reinhardtii
Kazusa DNA Research Institute