KCC003248A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003248A_C01 KCC003248A_c01
taaaCTCAATCGCCAAGCAACAAAGCTACAGCCCTATATCGGCAGTTGCAACATCCCAGC
GCGGGGGTTCGACTGCGTAATTACGAGCGTCGTTGAGCCGAGTTTGCAACCATGATGCTG
TCAGGCCGCACCTGCAATTGCGCCTTCAGTGCTCGTCGAACTAGCCTCCAACGCGGAGCG
CTCGCTTTCCAATCGGCGCGGCTGGTACCTCAACGGCCGCCGGCCACTTGCCGTCGCGCA
TCGTTTGTGCCCAGCGCCATCTTCATGCCAACAGAGGTGGAACAGAAGACCGGCACCACT
TCCAACAACGGCAATGTCACACCCTTGGAGGCTCGGACTGTCCCTTCCGAGCGCGCGCTG
ACCATCTGGCGCTCCGCCGACGCCGTCTGCTTCGACGTAGACTGCACCATCACCGTCAAC
GACGGCCTGGACCTGCTGGCCGAGTTCATGGGCGTCAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003248A_C01 KCC003248A_c01
         (458 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, ch...    56  2e-07
ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis ...    56  2e-07
ref|NP_502580.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    47  8e-05
ref|NP_502581.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    47  8e-05
ref|NP_502582.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    47  8e-05

>pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, chloroplast
           [validated] - Arabidopsis thaliana
           gi|3759177|dbj|BAA33806.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana] gi|3759179|dbj|BAA33807.1|
           3-phosphoserin phosphatase [Arabidopsis thaliana]
          Length = 295

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +1

Query: 328 EARTVPSERALTIWRSADAVCFDVDCTITVNDGLDLLAEFMG 453
           E   VPS+  L +WRS +AVCFDVD T+ V++G+D LAEF G
Sbjct: 67  EGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCG 108

>ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis thaliana]
           gi|25402864|pir||B86320 3-phosphoserine phosphatase
           [imported] - Arabidopsis thaliana
           gi|9795592|gb|AAF98410.1|AC026238_2 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|17529132|gb|AAL38792.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|20465705|gb|AAM20321.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|21592986|gb|AAM64935.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana]
          Length = 295

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +1

Query: 328 EARTVPSERALTIWRSADAVCFDVDCTITVNDGLDLLAEFMG 453
           E   VPS+  L +WRS +AVCFDVD T+ V++G+D LAEF G
Sbjct: 67  EGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCG 108

>ref|NP_502580.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|6425506|emb|CAB60608.1| Hypothetical protein
           Y62E10A.13a [Caenorhabditis elegans]
          Length = 287

 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 24/74 (32%), Positives = 37/74 (49%)
 Frame = +1

Query: 235 RASFVPSAIFMPTEVEQKTGTTSNNGNVTPLEARTVPSERALTIWRSADAVCFDVDCTIT 414
           R +   +A  +P  +    G T +  +           E    +WR ADAVCFDVD T+ 
Sbjct: 16  RVALPTTASAIPRSISTSPGETISKNH----------EEEVKRVWRKADAVCFDVDSTVC 65

Query: 415 VNDGLDLLAEFMGV 456
            ++G+D LA ++GV
Sbjct: 66  QDEGIDELAAYLGV 79

>ref|NP_502581.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|6425505|emb|CAB60607.1| Hypothetical protein
           Y62E10A.13b [Caenorhabditis elegans]
          Length = 290

 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 24/74 (32%), Positives = 37/74 (49%)
 Frame = +1

Query: 235 RASFVPSAIFMPTEVEQKTGTTSNNGNVTPLEARTVPSERALTIWRSADAVCFDVDCTIT 414
           R +   +A  +P  +    G T +  +           E    +WR ADAVCFDVD T+ 
Sbjct: 19  RVALPTTASAIPRSISTSPGETISKNH----------EEEVKRVWRKADAVCFDVDSTVC 68

Query: 415 VNDGLDLLAEFMGV 456
            ++G+D LA ++GV
Sbjct: 69  QDEGIDELAAYLGV 82

>ref|NP_502582.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|14530660|emb|CAC42380.1| Hypothetical protein
           Y62E10A.13c [Caenorhabditis elegans]
          Length = 276

 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 24/74 (32%), Positives = 37/74 (49%)
 Frame = +1

Query: 235 RASFVPSAIFMPTEVEQKTGTTSNNGNVTPLEARTVPSERALTIWRSADAVCFDVDCTIT 414
           R +   +A  +P  +    G T +  +           E    +WR ADAVCFDVD T+ 
Sbjct: 3   RVALPTTASAIPRSISTSPGETISKNH----------EEEVKRVWRKADAVCFDVDSTVC 52

Query: 415 VNDGLDLLAEFMGV 456
            ++G+D LA ++GV
Sbjct: 53  QDEGIDELAAYLGV 66



EST assemble image


clone accession position
1 LCL056f09_r AV629327 1 458
2 MXL088d03_r BP098154 5 370




Chlamydomonas reinhardtii
Kazusa DNA Research Institute