KCC003234A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003234A_C01 KCC003234A_c01
gCCAGCGCATGGAGGGCTCCTACATCAACCGCTCGCTGCTGACGCTGGGCACAGTCATCC
ACAAGCTGGCGTCGGTGGAGGGCCGAGGCGCCGCCGGAGCCGCCGGCCACATCCCTTTCC
GCGACTCCAAGCTGACGCGCCTGCTTCAACCGAGCTTGTCCGGCCCTGGCGCCCGGGTGG
CGGTGGTGTGCAACGTGACGCCGGCGGGCGGACAGAGCGATGAGACCGCCAACACGCTCA
AGTTCGCAGCGCGGGCCAAGCTGGTGCAGGTGACGGCCCGCGCCAACGAGCTGCTGGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003234A_C01 KCC003234A_c01
         (300 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195616.2| kinesin-related protein [Arabidopsis thaliana] ...   110  7e-24
gb|AAM13881.1| putative kinesin [Arabidopsis thaliana]                110  7e-24
pir||T06065 hypothetical protein F19H22.150 - Arabidopsis thalia...   110  7e-24
emb|CAD41022.1| OSJNBb0086G13.9 [Oryza sativa (japonica cultivar...   108  2e-23
ref|NP_187809.2| kinesin-related protein [Arabidopsis thaliana]       107  4e-23

>ref|NP_195616.2| kinesin-related protein [Arabidopsis thaliana]
           gi|16902294|dbj|BAB71852.1| kinesin-related protein
           [Arabidopsis thaliana] gi|23297817|gb|AAN13032.1|
           putative kinesin protein [Arabidopsis thaliana]
          Length = 1055

 Score =  110 bits (274), Expect = 7e-24
 Identities = 58/99 (58%), Positives = 74/99 (74%)
 Frame = +3

Query: 3   QRMEGSYINRSLLTLGTVIHKLASVEGRGAAGAAGHIPFRDSKLTRLLQPSLSGPGARVA 182
           +R EGSYIN+SLLTLGTVI KL+        G A HIP+RDSKLTRLLQ SLSG G  V+
Sbjct: 336 RRKEGSYINKSLLTLGTVIGKLSE-------GKATHIPYRDSKLTRLLQSSLSGHG-HVS 387

Query: 183 VVCNVTPAGGQSDETANTLKFAARAKLVQVTARANELLD 299
           ++C +TPA   S+ET NTLKFA+RAK +++ A  N+++D
Sbjct: 388 LICTITPASSSSEETHNTLKFASRAKSIEIYASRNQIID 426

>gb|AAM13881.1| putative kinesin [Arabidopsis thaliana]
          Length = 1055

 Score =  110 bits (274), Expect = 7e-24
 Identities = 58/99 (58%), Positives = 74/99 (74%)
 Frame = +3

Query: 3   QRMEGSYINRSLLTLGTVIHKLASVEGRGAAGAAGHIPFRDSKLTRLLQPSLSGPGARVA 182
           +R EGSYIN+SLLTLGTVI KL+        G A HIP+RDSKLTRLLQ SLSG G  V+
Sbjct: 336 RRKEGSYINKSLLTLGTVIGKLSE-------GKATHIPYRDSKLTRLLQSSLSGHG-HVS 387

Query: 183 VVCNVTPAGGQSDETANTLKFAARAKLVQVTARANELLD 299
           ++C +TPA   S+ET NTLKFA+RAK +++ A  N+++D
Sbjct: 388 LICTITPASSSSEETHNTLKFASRAKSIEIYASRNQIID 426

>pir||T06065 hypothetical protein F19H22.150 - Arabidopsis thaliana
           gi|4539324|emb|CAB38825.1| kinesin like protein
           [Arabidopsis thaliana] gi|7270888|emb|CAB80568.1|
           kinesin like protein [Arabidopsis thaliana]
          Length = 1121

 Score =  110 bits (274), Expect = 7e-24
 Identities = 58/99 (58%), Positives = 74/99 (74%)
 Frame = +3

Query: 3   QRMEGSYINRSLLTLGTVIHKLASVEGRGAAGAAGHIPFRDSKLTRLLQPSLSGPGARVA 182
           +R EGSYIN+SLLTLGTVI KL+        G A HIP+RDSKLTRLLQ SLSG G  V+
Sbjct: 409 RRKEGSYINKSLLTLGTVIGKLSE-------GKATHIPYRDSKLTRLLQSSLSGHG-HVS 460

Query: 183 VVCNVTPAGGQSDETANTLKFAARAKLVQVTARANELLD 299
           ++C +TPA   S+ET NTLKFA+RAK +++ A  N+++D
Sbjct: 461 LICTITPASSSSEETHNTLKFASRAKSIEIYASRNQIID 499

>emb|CAD41022.1| OSJNBb0086G13.9 [Oryza sativa (japonica cultivar-group)]
           gi|32488564|emb|CAE03218.1| OSJNBa0088K19.20 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1193

 Score =  108 bits (271), Expect = 2e-23
 Identities = 58/99 (58%), Positives = 73/99 (73%)
 Frame = +3

Query: 3   QRMEGSYINRSLLTLGTVIHKLASVEGRGAAGAAGHIPFRDSKLTRLLQPSLSGPGARVA 182
           +R EGSYIN+SLLTLGTVI KL         G A HIP+RDSKLTRLLQ SLSG G R++
Sbjct: 336 RRKEGSYINKSLLTLGTVIAKLTD-------GKATHIPYRDSKLTRLLQSSLSGHG-RIS 387

Query: 183 VVCNVTPAGGQSDETANTLKFAARAKLVQVTARANELLD 299
           ++C VTPA   S+ET NTLKFA R+K +++ A  N+++D
Sbjct: 388 LICTVTPASSNSEETHNTLKFAHRSKHIEIKASQNKIID 426

>ref|NP_187809.2| kinesin-related protein [Arabidopsis thaliana]
          Length = 1030

 Score =  107 bits (268), Expect = 4e-23
 Identities = 57/99 (57%), Positives = 72/99 (72%)
 Frame = +3

Query: 3   QRMEGSYINRSLLTLGTVIHKLASVEGRGAAGAAGHIPFRDSKLTRLLQPSLSGPGARVA 182
           +R EGSYIN+SLLTLGTVI KL  V        A H+P+RDSKLTR+LQ SLSG   RV+
Sbjct: 309 RRKEGSYINKSLLTLGTVISKLTDVR-------ASHVPYRDSKLTRILQSSLSGHD-RVS 360

Query: 183 VVCNVTPAGGQSDETANTLKFAARAKLVQVTARANELLD 299
           ++C VTPA   S+ET NTLKFA RAK +++ A  N+++D
Sbjct: 361 LICTVTPASSSSEETHNTLKFAHRAKHIEIQAEQNKIID 399



EST assemble image


clone accession position
1 LCL059g07_r AV629495 1 300
2 LCL051b08_r AV629064 2 232




Chlamydomonas reinhardtii
Kazusa DNA Research Institute