KCC003232A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003232A_C01 KCC003232A_c01
ctggaCCTTAATTTACTTTATACAATATTTCCCAGACAGTTCTGAAAACCTTCGTAGCGG
AAGGCCCTTGGCCGCTTCAGAAACCGACGAAGGCGGGCGGACTTGGTTCGCGCTTAGTAG
TCAAACAGGCGCTGCAGTCCTGCTCGTATTACAGTATTACATCAAACCTTGATGCTGAGT
TACTCAGGGTAGACGCGAGGACGCTGACTAGTGCTGAGCTTGCGGCCTGTGGCTTTTTAC
GGAGCGGAGCCATGCTACGAGGAGCTGTGCAGACATGTGTGCTTGTTCTGGTGCTGGTGC
TAGTTTGCGTGTCGGCGCTCGGCGAGGTCGAGTGGCGAGGTGACCAGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003232A_C01 KCC003232A_c01
         (349 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

prf||2119294A YFW1 gene                                                37  0.071
ref|XP_318620.1| ENSANGP00000020885 [Anopheles gambiae] gi|21302...    35  0.21
ref|NP_650778.1| CG6026-PA [Drosophila melanogaster] gi|10726612...    34  0.46
gb|AAP50671.1| rh148 [Rhesus cytomegalovirus strain 68-1]              33  0.79
gb|AAL25435.1| LD30158p [Drosophila melanogaster]                      33  0.79

>prf||2119294A YFW1 gene
          Length = 605

 Score = 37.0 bits (84), Expect = 0.071
 Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 8/93 (8%)
 Frame = -1

Query: 349 SWSPRHSTSPSAD--------TQTSTSTRTSTHVCTAPRSMAPLRKKPQAASSALVSVLA 194
           S +P  ST+PS D        T T+TST+ ST + T+  S         +++S  VSV +
Sbjct: 158 STTPSTSTTPSTDITSALPLTTATTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTS 217

Query: 193 STLSNSASRFDVIL*YEQDCSACLTTKREPSPP 95
           ST + +++    ++      S+  T     S P
Sbjct: 218 STSTTTSTTSSTLISTSTSSSSSSTPTTTSSAP 250

>ref|XP_318620.1| ENSANGP00000020885 [Anopheles gambiae] gi|21302266|gb|EAA14411.1|
           ENSANGP00000020885 [Anopheles gambiae str. PEST]
          Length = 388

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = -1

Query: 349 SWSPRHSTSPSADTQTSTSTRTSTHVCTAPRSMA--PLRKKPQAASSALV-----SVLAS 191
           S S   ST+PS+ T TS +T TS  + T+P S +   +R  P A +S        S   S
Sbjct: 128 SSSSTESTTPSSTTSTSMTTPTSPTIPTSPTSPSSPTIRTSPSATTSPSTPKTSSSTTES 187

Query: 190 TLSNSASRFDVIL*YEQDCSACLTTKREPSPP 95
           T ++S +     +       +  TT+  PS P
Sbjct: 188 TTASSTTSISPTIPSSPTSLSSPTTRTSPSAP 219

>ref|NP_650778.1| CG6026-PA [Drosophila melanogaster] gi|10726612|gb|AAF55629.2|
           CG6026-PA [Drosophila melanogaster]
          Length = 1542

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 22/80 (27%), Positives = 32/80 (39%)
 Frame = -1

Query: 334 HSTSPSADTQTSTSTRTSTHVCTAPRSMAPLRKKPQAASSALVSVLASTLSNSASRFDVI 155
           + +SPS  T T+TST T+T   T  R   P  +KP   ++       +    + SR  + 
Sbjct: 181 YPSSPSTSTSTTTSTSTTTTTTTTTRGTLPPSRKPVTTTTTTAPTSPAAKYTTTSRRPIP 240

Query: 154 L*YEQDCSACLTTKREPSPP 95
           L          T    P PP
Sbjct: 241 L---------QTVSTTPQPP 251

>gb|AAP50671.1| rh148 [Rhesus cytomegalovirus strain 68-1]
          Length = 356

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 6/64 (9%)
 Frame = -1

Query: 343 SPRHSTSPSADTQTSTST------RTSTHVCTAPRSMAPLRKKPQAASSALVSVLASTLS 182
           SP+ STS +  T T+T T      ++ST V ++P +      KP   SS  VS  AS  S
Sbjct: 67  SPKSSTSSTNTTITTTGTASATTPKSSTSVTSSPANTTSTSTKPTNVSSPTVSSPASNTS 126

Query: 181 NSAS 170
            + S
Sbjct: 127 TTTS 130

>gb|AAL25435.1| LD30158p [Drosophila melanogaster]
          Length = 243

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 27/91 (29%), Positives = 45/91 (48%), Gaps = 6/91 (6%)
 Frame = -1

Query: 325 SPSADTQTSTSTRTSTHVCTAPRSMAPLRKKPQAASSALVSVLASTLSNSASRFDVI--- 155
           S S+ T T+TST +S  + T   SM+PL   P   +         T+SN++S  +++   
Sbjct: 109 SNSSSTATTTSTSSSPSLTTTSSSMSPL--SPHTPTGNPPPQFPMTISNTSSSSNLVAAS 166

Query: 154 --L*YEQDCSACLTTKREPSP-PAFVGF*SG 71
             +  + DCS+  ++    SP PA  G+  G
Sbjct: 167 PTMSVQSDCSSPSSSTMSLSPAPASGGYPDG 197



EST assemble image


clone accession position
1 MXL075h01_r BP097445 1 349
2 LCL048g01_r AV628902 6 318




Chlamydomonas reinhardtii
Kazusa DNA Research Institute