Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003231A_C01 KCC003231A_c01
(456 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_595092.1| replication factor-a protein 1 [Schizosaccharom... 56 2e-07
dbj|BAB40712.1| replication protein A 70kDa [Oryza sativa (japon... 55 4e-07
ref|NP_178690.1| replication protein, putative [Arabidopsis thal... 51 7e-06
sp|Q01588|RFA1_XENLA REPLICATION PROTEIN A 70 KD DNA-BINDING SUB... 50 2e-05
ref|XP_213389.2| similar to replication protein A1 [Rattus norve... 48 6e-05
>ref|NP_595092.1| replication factor-a protein 1 [Schizosaccharomyces pombe]
gi|2498845|sp|Q92372|RFA1_SCHPO Replication factor-A
protein 1 (Single-stranded DNA-binding protein p68
subunit) gi|7493272|pir||T40625 single-stranded
DNA-binding protein 68k chain [validated] - fission
yeast (Schizosaccharomyces pombe)
gi|1502413|gb|AAC49437.1| single-stranded DNA binding
protein p68 subunit gi|1814272|gb|AAC49694.1| Rpa1
[Schizosaccharomyces pombe] gi|4049512|emb|CAA22533.1|
ssb1 [Schizosaccharomyces pombe]
Length = 609
Score = 55.8 bits (133), Expect = 2e-07
Identities = 35/109 (32%), Positives = 57/109 (52%)
Frame = +3
Query: 90 LSTGALLHVAATSSGPDAKVPITGVFQVLDIKQIQSKDNAANAKPRHKARMSDGQYTLIC 269
LS GAL + + + + P + QVL +K++ S + K R++ +SD
Sbjct: 5 LSVGALRIINTSDA---SSFPPNPILQVLTVKELNSNPTSGAPK-RYRVVLSDSINYAQS 60
Query: 270 MLSSQVGDLVLSGALVQGAIVQITDFIINQVNDRKMFIAFNCSVLEQYG 416
MLS+Q+ LV L +GA VQ+T F +N + +RK+ I +VL + G
Sbjct: 61 MLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELG 109
>dbj|BAB40712.1| replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)]
Length = 654
Score = 55.1 bits (131), Expect = 4e-07
Identities = 30/97 (30%), Positives = 54/97 (54%)
Frame = +3
Query: 114 VAATSSGPDAKVPITGVFQVLDIKQIQSKDNAANAKPRHKARMSDGQYTLICMLSSQVGD 293
VAA +G P V Q+++++ +Q R +A +SDG + ++Q+ D
Sbjct: 9 VAAALAGDTNLKP---VLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSD 65
Query: 294 LVLSGALVQGAIVQITDFIINQVNDRKMFIAFNCSVL 404
SGAL +G+IVQ+++++IN+V R++ + N VL
Sbjct: 66 HARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVL 102
>ref|NP_178690.1| replication protein, putative [Arabidopsis thaliana]
gi|25294331|pir||B84478 probable replication protein A1
[imported] - Arabidopsis thaliana
gi|4584356|gb|AAD25150.1| putative replication protein
A1 [Arabidopsis thaliana] gi|26452416|dbj|BAC43293.1|
putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis
thaliana]
Length = 640
Score = 50.8 bits (120), Expect = 7e-06
Identities = 29/91 (31%), Positives = 48/91 (51%)
Frame = +3
Query: 138 DAKVPITGVFQVLDIKQIQSKDNAANAKPRHKARMSDGQYTLICMLSSQVGDLVLSGALV 317
D V + + QVL+IK I ++ R++ +SDG M++ Q+ D V SG
Sbjct: 15 DGDVNLKPLLQVLEIKMIGRSQE--RSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFE 72
Query: 318 QGAIVQITDFIINQVNDRKMFIAFNCSVLEQ 410
+G+IVQ+ D+I + V RK+ + N + Q
Sbjct: 73 KGSIVQLIDYICSDVKGRKLIVVLNMETIVQ 103
>sp|Q01588|RFA1_XENLA REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A)
(REPLICATION FACTOR-A PROTEIN 1) (SINGLE-STRANDED
DNA-BINDING PROTEIN) gi|345603|pir||A43458 replication
protein A1 - African clawed frog
gi|65066|emb|CAA47665.1| replication protein A (RPA)
[Xenopus laevis]
Length = 609
Score = 49.7 bits (117), Expect = 2e-05
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Frame = +3
Query: 84 PPLSTGALLHVAATSSGPDAKVPITGVFQVLDIKQIQSKDNAANAKPRHKARMSDGQYTL 263
P LS GA ++A G + P QV++I+ I N N PR++ MSDG TL
Sbjct: 4 PQLSEGA---ISAMLGGDSSCKP---TLQVINIRPI----NTGNGPPRYRLLMSDGLNTL 53
Query: 264 IC-MLSSQVGDLVLSGALVQGAIVQITDFIINQVND-RKMFIAFNCSVLE 407
ML++Q+ LV + L I Q++ FI+N + D R++ I VL+
Sbjct: 54 SSFMLATQLNSLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMELDVLK 103
>ref|XP_213389.2| similar to replication protein A1 [Rattus norvegicus]
Length = 614
Score = 47.8 bits (112), Expect = 6e-05
Identities = 42/125 (33%), Positives = 63/125 (49%), Gaps = 3/125 (2%)
Frame = +3
Query: 90 LSTGALLHVAATSSGPDAKVPITGVFQVLDIKQIQSKDNAANAKPRHKARMSDGQYTLIC 269
LS GA +AA D I V QV++I+ I + N+ PR++ MSDG TL
Sbjct: 5 LSEGA---IAAIMQQGDTS--IKPVLQVINIRPITT----GNSPPRYRLLMSDGLNTLSS 55
Query: 270 -MLSSQVGDLVLSGALVQGAIVQITDFIINQVND-RKMFIAFNCSVLEQYGTYQAPIMVP 443
ML++Q+ LV G L + Q+ FI+N + D R++ I + V++ G I P
Sbjct: 56 FMLATQLNALVEGGQLASNCVCQVHRFIVNTLKDGRRVVILMDLEVVKSAGEVGVKIGNP 115
Query: 444 -PHTE 455
P+ E
Sbjct: 116 VPYNE 120
