Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003230A_C01 KCC003230A_c01
(634 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_002430.1| mutS homolog 3; mutS (E. coli) homolog 3 [Homo ... 33 0.031
gb|AAN85523.1|AF484556_45 polyketide synthase [Streptomyces atro... 39 0.082
emb|CAC06697.1| Kruppel like factor [Mus musculus] 39 0.082
ref|XP_299078.1| hypothetical protein XP_299078 [Homo sapiens] 39 0.082
ref|NP_067341.2| Kruppel-like factor 13; basic transcription ele... 39 0.082
>ref|NP_002430.1| mutS homolog 3; mutS (E. coli) homolog 3 [Homo sapiens]
gi|1490521|gb|AAB06045.1| hMSH3
Length = 1128
Score = 33.1 bits (74), Expect(2) = 0.031
Identities = 20/61 (32%), Positives = 29/61 (46%)
Frame = +3
Query: 216 KPNKWAVCASGPPTVHQRQLARTSRRSSAVACTSSSELAAARAAPYQVPSPAPPAPKPQP 395
KP + AS Q L+R + + ++ TSSS AA + P + APPAP P
Sbjct: 5 KPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAPPAPAFPP 64
Query: 396 E 398
+
Sbjct: 65 Q 65
Score = 25.8 bits (55), Expect(2) = 0.031
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 481 LPPWQKDNIINSRSSGIPSTGAQAEKLEGTAQQEHGGDQLGGNSPSQPRR 630
LPP I + + + G +K++ QQ+ GG LG + S+P++
Sbjct: 66 LPPHVATEIDRRKKRPLENDGPVKKKVK-KVQQKEGGSDLGMSGNSEPKK 114
>gb|AAN85523.1|AF484556_45 polyketide synthase [Streptomyces atroolivaceus]
Length = 7349
Score = 38.5 bits (88), Expect = 0.082
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Frame = +3
Query: 207 PEPKPNKWAVCASGPPTVHQRQLARTSRRSSAVACTSSSELAAARA-APYQVPSPAPPAP 383
P+ +P AV A T+ R A+ +RR + + A A AP + P PAPPAP
Sbjct: 5967 PDAEPTAPAVPARKEATMTARSEAQPTRRGPKIRLAAPRSAGGASATAPTREPVPAPPAP 6026
Query: 384 KPQP 395
P P
Sbjct: 6027 APAP 6030
Score = 32.3 bits (72), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (43%), Gaps = 5/59 (8%)
Frame = +3
Query: 261 HQRQLARTSRRSSAVACTSSSELAAARAAPYQVPSPAP-----PAPKPQPEQVKQEVVC 422
H R+L R S A + ++ AA AA P+PAP PAP +PE C
Sbjct: 1704 HVRELHRQSPAPRPQAAPAPAQPAAPEAAALPAPAPAPAPAPAPAPASKPEPAASPDAC 1762
>emb|CAC06697.1| Kruppel like factor [Mus musculus]
Length = 288
Score = 38.5 bits (88), Expect = 0.082
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Frame = +3
Query: 207 PEPKPNKWAVCASGPPTVHQRQ--------------LARTSRRSSAVACTSSSELAAARA 344
PEP+P A A P V +R+ LA ++++ A A E AAAR
Sbjct: 30 PEPRPEGAAAAAPTLPRVDERRDGKDSASLFVVARILADLNQQAPAPAPAERREGAAARK 89
Query: 345 A--PYQVPSPAPPAPKPQPE 398
A P ++P PAPPAP P PE
Sbjct: 90 ARTPCRLP-PAPPAPPPGPE 108
>ref|XP_299078.1| hypothetical protein XP_299078 [Homo sapiens]
Length = 480
Score = 38.5 bits (88), Expect = 0.082
Identities = 48/154 (31%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Frame = +1
Query: 181 GEHRPGSDDLNQSQINGLSVLRD----PQQSTRDS*PEPAGEAVLSPAPAAVSWQQPEQR 348
GE PG Q+ GL R P R S PEP E A+ +P QR
Sbjct: 36 GEQGPGVSWREDVQVAGLLPSRPTTLGPSPRKRKSEPEPEPEPEPDGGCRALRQPEPAQR 95
Query: 349 PTRFPRPLLLRLSRSRSR*SRRWFA-APSPALLAESAESSF-------HAAALPPWQKDN 504
PRP R RSR S A AP P+ SA+ SF A+ PP Q+D
Sbjct: 96 SPHPPRPTCERRPGMRSRPSPVPGAPAPRPSGCNISAQRSFCEHPGVVATASPPPTQQD- 154
Query: 505 IINSRSSGIPSTGAQAEKLEGTAQQEHGGDQLGG 606
S +G S A + + + + E G + GG
Sbjct: 155 ---SPRTGPHSQSAGSAPQQRSREPEDPGTRGGG 185
>ref|NP_067341.2| Kruppel-like factor 13; basic transcription element binding protein
3 [Mus musculus] gi|17369054|sp|Q9JJZ6|KLFD_MOUSE
Krueppel-like factor 13 (Transcription factor BTEB3)
(Basic transcription element binding protein 3)
(BTE-binding protein 3) (RANTES factor of late activated
T lymphocytes-1) (RFLAT-1) (Erythroid transcription
factor FKLF-2) gi|7649277|gb|AAF65826.1|AF252285_1
RANTES factor of late activated T lymphocytes-1 [Mus
musculus] gi|8164186|gb|AAF73964.1|AF251796_1 erythroid
transcription factor FKLF-2 [Mus musculus]
Length = 289
Score = 38.5 bits (88), Expect = 0.082
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Frame = +3
Query: 207 PEPKPNKWAVCASGPPTVHQRQ--------------LARTSRRSSAVACTSSSELAAARA 344
PEP+P A A P V +R+ LA ++++ A A E AAAR
Sbjct: 31 PEPRPEGAAAAAPTLPRVDERRDGKDSASLFVVARILADLNQQAPAPAPAERREGAAARK 90
Query: 345 A--PYQVPSPAPPAPKPQPE 398
A P ++P PAPPAP P PE
Sbjct: 91 ARTPCRLP-PAPPAPPPGPE 109
