Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003201A_C01 KCC003201A_c01
(454 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00092630.1| COG0810: Periplasmic protein TonB, links inne... 41 0.005
dbj|BAA33379.1| alpha 2 type I collagen [Oncorhynchus mykiss] 40 0.012
sp|O93484|CA21_ONCMY Collagen alpha 2(I) chain precursor gi|1416... 40 0.012
ref|NP_006227.1| POU domain, class 3, transcription factor 3 [Ho... 40 0.016
ref|XP_332141.1| hypothetical protein [Neurospora crassa] gi|289... 39 0.027
>ref|ZP_00092630.1| COG0810: Periplasmic protein TonB, links inner and outer membranes
[Azotobacter vinelandii]
Length = 286
Score = 41.2 bits (95), Expect = 0.005
Identities = 33/86 (38%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 165 PGGPVQVDSEPRDPQHAAMKPTPERGTHVHGSSAFLQALGDAPHAETAWRPPPASGPGPG 344
P PV + PR KP P R + A +AP A TA PPA P P
Sbjct: 119 PPPPVVEELAPRKAPPKPPKPQPPRQKAEAKPARTPPAKAEAPPAPTA---PPAPAPAPA 175
Query: 345 PAQAPGAALYA-AHHVAPSCPDLAGA 419
PA AP A A A AP P AGA
Sbjct: 176 PAPAPAAPTSAPAPAQAPLTPPSAGA 201
>dbj|BAA33379.1| alpha 2 type I collagen [Oncorhynchus mykiss]
Length = 940
Score = 40.0 bits (92), Expect = 0.012
Identities = 29/88 (32%), Positives = 34/88 (37%)
Frame = -1
Query: 421 GAPARSGQDGATWCAAYSAAPGACAGPGPGPLAGGGRQAVSA*GASPRACRNADEPCTCV 242
G P G G + + A G GPGP +AG A A PR R P
Sbjct: 350 GPPGGRGDAGPSGLTGFPGAAGRVGGPGPAGIAGPPGSAGPAGKDGPRGLRGDPGPGGPQ 409
Query: 241 PRSGVGFMAACWGSRGSLSTWTGPPGQP 158
GV A G +G S +GPPG P
Sbjct: 410 GEQGVVGPAGISGDKGP-SGESGPPGAP 436
>sp|O93484|CA21_ONCMY Collagen alpha 2(I) chain precursor gi|14164351|dbj|BAB55663.1|
collagen a2(I) [Oncorhynchus mykiss]
Length = 1356
Score = 40.0 bits (92), Expect = 0.012
Identities = 29/88 (32%), Positives = 34/88 (37%)
Frame = -1
Query: 421 GAPARSGQDGATWCAAYSAAPGACAGPGPGPLAGGGRQAVSA*GASPRACRNADEPCTCV 242
G P G G + + A G GPGP +AG A A PR R P
Sbjct: 766 GPPGGRGDAGPSGLTGFPGAAGRVGGPGPAGIAGPPGSAGPAGKDGPRGLRGDPGPGGPQ 825
Query: 241 PRSGVGFMAACWGSRGSLSTWTGPPGQP 158
GV A G +G S +GPPG P
Sbjct: 826 GEQGVVGPAGISGDKGP-SGESGPPGAP 852
>ref|NP_006227.1| POU domain, class 3, transcription factor 3 [Homo sapiens]
gi|2506534|sp|P20264|PO33_HUMAN POU domain, class 3,
transcription factor 3 (Brain-specific homeobox/POU
domain protein 1) (Brain-1) (Brn-1 protein)
gi|1902886|dbj|BAA19459.1| Brain-1 [Homo sapiens]
Length = 500
Score = 39.7 bits (91), Expect = 0.016
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Frame = +3
Query: 162 WPGGPVQVDSEPRDPQHAAMKPTPERGTHVHGSSAFLQALGDAPHAETAW--RPPPASGP 335
W G V + P+ P P P +G V G + D HA TA R PP GP
Sbjct: 122 WSGSAVGMAGSPQQPPQPP--PPPPQGPDVKGGAG-----RDDLHAGTALHHRGPPHLGP 174
Query: 336 GPGP----------AQAPGAALYAAHHVAPSCPDLAGA----PQALQYYNP 446
P P A A AA AA A P +AG PQ+L Y P
Sbjct: 175 PPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQP 225
>ref|XP_332141.1| hypothetical protein [Neurospora crassa] gi|28919346|gb|EAA28799.1|
hypothetical protein [Neurospora crassa]
Length = 1059
Score = 38.9 bits (89), Expect = 0.027
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Frame = +3
Query: 102 PIPSLFRRFDSSS*LKMAGGWP---------GGPVQ--------VDSEPRDPQHAAMKPT 230
P PS +R +SS +GG+P PVQ + P PT
Sbjct: 187 PGPSPYRHTPTSSISAQSGGYPFPPSAQHTPTSPVQRPYNQYPPSSTGAAYPSREGYPPT 246
Query: 231 PERGTHVHGSSAFLQALGDAPHAETAWRPPPASGPGPGPAQAPGAALYAAHHVAP 395
P V G Q P PPP GPGPGP PG+A A + P
Sbjct: 247 PGGSVGVAGPQQQQQQQQQQPPPPP---PPPGPGPGPGPGPGPGSAGRAPYLQGP 298
