Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003185A_C01 KCC003185A_c01
(534 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_297424.1| hypothetical protein XP_297424 [Homo sapiens] 33 1.8
ref|NP_294509.1| hypothetical protein [Deinococcus radiodurans] ... 33 1.8
ref|NP_189877.1| hypothetical protein [Arabidopsis thaliana] gi|... 31 8.9
gb|AAL76005.1|AF466646_13 putative polyprotein [Zea mays] 31 8.9
gb|AAL75746.1|AC091724_19 Putative polyprotein [Oryza sativa] gi... 31 8.9
>ref|XP_297424.1| hypothetical protein XP_297424 [Homo sapiens]
Length = 223
Score = 33.5 bits (75), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 377 AYMHLGSRAVTLNDLRLQGTSACILQLIVTTVLPVVW 487
AY+H G A+ + + G+ C++QL V+ ++P VW
Sbjct: 164 AYLHWGCLAIVESVEMIHGSDRCLVQLDVSLIIPKVW 200
>ref|NP_294509.1| hypothetical protein [Deinococcus radiodurans]
gi|7472601|pir||E75476 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6458503|gb|AAF10369.1|AE001933_13 hypothetical
protein [Deinococcus radiodurans]
Length = 273
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = -2
Query: 512 SPCCRK*GTTRLAAPWSRSAAGCRLTCPVVLGH*E*LPGCPNACTHVSTRQTCLPAASST 333
+PC RK G R+A PW + CR T PV CP S P A
Sbjct: 26 APCPRKAG--RVAVPWRAATPSCRCTAPVA-------ASCPPTSATKSRVPVACPTADRL 76
Query: 332 GSAFRPL 312
G+ + L
Sbjct: 77 GAGAKAL 83
>ref|NP_189877.1| hypothetical protein [Arabidopsis thaliana] gi|11357563|pir||T47349
hypothetical protein F18P9.70 - Arabidopsis thaliana
gi|7529262|emb|CAB86678.1| putative protein [Arabidopsis
thaliana]
Length = 649
Score = 31.2 bits (69), Expect = 8.9
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 7/76 (9%)
Frame = -2
Query: 260 PCPI*QRCAD*DGLWPIAPFVCR-------SKLRSELPGELLGIAGYVCKIDLFQSVVLC 102
P PI D D L+P+ P VCR S ++ P + G+ YV I +
Sbjct: 193 PLPIFDEDDDFDTLFPVRPLVCRSSRLDKDSNRDTQAPDKGFGLENYVDVIASYY----- 247
Query: 101 KRCAPPKCRVSTAWLG 54
K C P C S A +G
Sbjct: 248 KGCFPGDCSGSQAAVG 263
>gb|AAL76005.1|AF466646_13 putative polyprotein [Zea mays]
Length = 343
Score = 31.2 bits (69), Expect = 8.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 50 IHLTKLWRHDILGARTVCTTRLTGTSLSYIHTQQ 151
+H K+WRH I+G T C SL YI TQ+
Sbjct: 173 VHALKIWRHYIMG--TKCQVYTDHKSLKYIFTQK 204
>gb|AAL75746.1|AC091724_19 Putative polyprotein [Oryza sativa] gi|31430267|gb|AAP52207.1|
putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1322
Score = 31.2 bits (69), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 50 IHLTKLWRHDILGARTVCTTRLTGTSLSYIHTQ 148
+H K+WRH ++G+R C SL YI TQ
Sbjct: 776 VHALKIWRHYLIGSR--CEVYTDHKSLKYIFTQ 806
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,859,708
Number of Sequences: 1537769
Number of extensions: 10987983
Number of successful extensions: 32391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32375
length of database: 498,525,298
effective HSP length: 116
effective length of database: 320,144,094
effective search space used: 19528789734
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
