KCC003174A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003174A_C01 KCC003174A_c01
ccgagggccctggcggcgacaacggcgcgcaacggctcgtatcagcccgtggaggacgcc
gcggcaaccaggtccgagttCCCAGGAGCGAGATGGTTGGAGGCCGTGGCGGAGGCCGCG
CGGCGCGGCGGTCTGCAACCGAGATGCCCGGGGCAGCAGCTGGAGCTGAAGACGGCTCTG
CAGCGGAGACGGTGGCGGTGCCTGGCGGCGCAGAGGCCTCGGACTCGGATTCAGACGTGG
AGAAGCTGACATGCGTAATCTGCTGCGAGGAGGTCGGCTGGCTGGCGGTGGGCCCCTGCG
GTCACACGCACACGTGCGCGCGCTGCTGCTTGCGGCTGCGGCTGCTTTACCGGGACAACA
AGTGCCCGCTGTGCAAGCAGGATAACAAGGAGGTGGTGGTCACGCGGCCGCCACTACCGC
CCGGTGCCACTTTCGAGTCGCTGCGGGCTGGCGAGTTGCAGCCACAGCCACCGGCGGCGG
CCTCGGCCTCGGCTGCGTCCAGCAGCGGCGGCACTGCCAGTGGTGGCGGCGGCAGCGGCC
GTGGCCAGTCATCGTTATGGCAGCAACCTCGCTGGGCCAAGGGCGTGTTGGTGCTGGACC
CGCTGACAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003174A_C01 KCC003174A_c01
         (609 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_330979.1| hypothetical protein [Neurospora crassa] gi|289...    74  2e-12
dbj|BAC83819.1| hypothetical protein [Oryza sativa (japonica cul...    64  1e-09
dbj|BAC10142.1| hypothetical protein [Oryza sativa (japonica cul...    64  2e-09
dbj|BAC10143.1| hypothetical protein [Oryza sativa (japonica cul...    63  4e-09
gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     45  1e-08

>ref|XP_330979.1| hypothetical protein [Neurospora crassa] gi|28920960|gb|EAA30286.1|
           hypothetical protein [Neurospora crassa]
          Length = 838

 Score = 73.9 bits (180), Expect = 2e-12
 Identities = 44/138 (31%), Positives = 64/138 (45%), Gaps = 1/138 (0%)
 Frame = +3

Query: 3   EGPGGDNGAQRLVSARGGRRGNQVRVPRSEMVGGRGGGRAARRSATEMPGAAAGAEDGSA 182
           +GP GD+   R    RG  RGN+ R    +  G  G GR   R   +   A   A+D S+
Sbjct: 10  QGPRGDSNRDR-GRGRGAARGNRNRGGGGDGAGRGGAGRGKSRGGGQQGAAPTPAQDSSS 68

Query: 183 AETVAVPGGAEAS-DSDSDVEKLTCVICCEEVGWLAVGPCGHTHTCARCCLRLRLLYRDN 359
            ++       +   ++  D +   C IC   +   +V PCGH+ TC  C LRLR LY++ 
Sbjct: 69  GDSNPTQWKTQQQQEAQDDDDAEVCFICANPITHHSVAPCGHS-TCHLCALRLRALYKNK 127

Query: 360 KCPLCKQDNKEVVVTRPP 413
            CP C+     V+ T  P
Sbjct: 128 DCPHCRTAAPFVIFTDDP 145

>dbj|BAC83819.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 630

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 54/138 (39%), Positives = 58/138 (41%), Gaps = 1/138 (0%)
 Frame = -1

Query: 585 RPWPSEVAAITMTGHGRCRRHHWQCRRCWTQPRPRPPPVAVAATRQPAATRKWHRAVVAA 406
           RPW S  +  T   HG CRR H   RR  T   P PP +       P      HR VVA 
Sbjct: 476 RPWLSAASPPTCRRHG-CRRRHHPRRRRRTGSEP-PPDLREGGPPAP----NLHRPVVAR 529

Query: 405 A*PPPPCYPACTAGTCCPGKAAAAASSSARTCACDRRGPPPASRPPRSRLRMSA-SPRLN 229
             PPPP  P      CCP  AA             R  PPP   P RS L  SA  P   
Sbjct: 530 RHPPPPLAP------CCPPPAAQPR----------RLPPPPRCGPRRSHLGRSARCPLPA 573

Query: 228 PSPRPLRRQAPPPSPLQS 175
           P+PRP R   PPP+P  S
Sbjct: 574 PAPRPRR---PPPTPSAS 588

>dbj|BAC10142.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 30/89 (33%), Positives = 46/89 (50%)
 Frame = +3

Query: 141 EMPGAAAGAEDGSAAETVAVPGGAEASDSDSDVEKLTCVICCEEVGWLAVGPCGHTHTCA 320
           ++ G +A A D S    V +  GA            +C +C E + W A+GPCGH   CA
Sbjct: 3   QLDGNSAAAGDHSH---VVIDIGAAGDGDSRRRSSSSCAVCTEPLEWAAIGPCGHGDVCA 59

Query: 321 RCCLRLRLLYRDNKCPLCKQDNKEVVVTR 407
            C LR+R+   + +C +C+   + VVVT+
Sbjct: 60  GCSLRIRVFQNNRRCCICRAPCRVVVVTK 88

>dbj|BAC10143.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 215

 Score = 62.8 bits (151), Expect = 4e-09
 Identities = 30/82 (36%), Positives = 43/82 (51%)
 Frame = +3

Query: 159 AGAEDGSAAETVAVPGGAEASDSDSDVEKLTCVICCEEVGWLAVGPCGHTHTCARCCLRL 338
           AGA    + + V   GGA  S         +CV+C E + W A+GPCGH   CA C L +
Sbjct: 10  AGAAGDHSHDVVIDVGGATTS---------SCVVCMEPLEWAAIGPCGHGDVCAGCALHI 60

Query: 339 RLLYRDNKCPLCKQDNKEVVVT 404
           R+   + +C +C+   + VVVT
Sbjct: 61  RVFQNNRRCCICRAPCRVVVVT 82

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 45.4 bits (106), Expect(2) = 1e-08
 Identities = 49/143 (34%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
 Frame = -1

Query: 603 AGPA-PTRPWPSEVAAITMTGHGRCRRHHWQCRRCWTQPRPRPPPVAVAATRQPAATRKW 427
           AGPA P R  P     I   G  RCR     CR    +P     P   A   +P AT  +
Sbjct: 346 AGPAGPRRSAPGRARRIRARG-SRCRC----CRGAGVEPEG---PANGAGAGRPTATSGY 397

Query: 426 HRAVVAA--A*PPPPCYPACTAGTCCPGKAAAAASSSARTCACDRRGPPPASRPPRSRLR 253
            R   A   A  PP   PA T           AAS+ ART +   R   P +RP      
Sbjct: 398 ARPQHARPPARAPPGPRPAPTR----------AASTPARTGS---RPASPPTRPTAPSPA 444

Query: 252 MSASPRLNPSPRPLRRQAPPPSP 184
            +A PR   +P P RR  PPP+P
Sbjct: 445 PAAPPRAAAAPTPARRPPPPPTP 467

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 40/130 (30%), Positives = 45/130 (33%), Gaps = 25/130 (19%)
 Frame = -1

Query: 498 TQPRPRPPPVA-VAATRQPAATRKWHRAVVAAA*PPPPCYPAC----------------- 373
           T  RP  PP    A +  PAA  +   A   A  PPPP  P                   
Sbjct: 427 TGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVPRARRGPAAGNGRPPST 486

Query: 372 ---TAGTCCPGKAAAAASSSARTCACDRRGPPPASRPPRSRLRMS----ASPRLNPSPRP 214
              TAGT  P     A     R     RR PPP + PP      +    A+PR  P PRP
Sbjct: 487 RDRTAGTRAPASPPGAPPPVRR-----RRPPPPRAPPPHHPSARNPSARATPRPRPPPRP 541

Query: 213 LRRQAPPPSP 184
                P P P
Sbjct: 542 SAAARPEPPP 551

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = -1

Query: 492 PRPRPPPVAVAATRQPAATRKWHRAVVAAA*PPPPCYPACTAGTCCPGKAAAAASSSART 313
           P PRP P   A+T     +R         A  P P  P   A    P +      +    
Sbjct: 411 PGPRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVP 470

Query: 312 CACDRRGP------PPASRPPRSRLRMSASPRLNPSPRPLRRQAPPPSP 184
            A  RRGP      PP++R   +  R  ASP   P P   RR  PP +P
Sbjct: 471 RA--RRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRPPPPRAP 517

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 33/101 (32%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
 Frame = -3

Query: 292 PTASQPTSSQQITHVSFSTSESESEASAPPGTATVSAAEPSSAPAAAPGISVADRRAARP 113
           P  + P      T  + + + + S  ++PP   T     PS APAA P  + A   A RP
Sbjct: 406 PARAPPGPRPAPTRAASTPARTGSRPASPPTRPTA----PSPAPAAPPRAAAAPTPARRP 461

Query: 112 PPRPPTISLLGTRTWLPR---RPPRA---DTSRCAPLSPPG 8
           PP PPT  +   R        RPP          AP SPPG
Sbjct: 462 PP-PPTPPVPRARRGPAAGNGRPPSTRDRTAGTRAPASPPG 501

 Score = 35.4 bits (80), Expect(2) = 1e-08
 Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
 Frame = -3

Query: 208 PPGTATVSAAEPSSAPAAAPGISVADRRAARPPPRPPTISLLGTR------TWLPRRPPR 47
           PP T   +A   + APA+ PG     RR   PPPR P       R      T  PR PPR
Sbjct: 483 PPSTRDRTAG--TRAPASPPGAPPPVRRRRPPPPRAPPPHHPSARNPSARATPRPRPPPR 540

Query: 46  ---ADTSRCAPLSPPGPS 2
              A      P + PGPS
Sbjct: 541 PSAAARPEPPPRAAPGPS 558



EST assemble image


clone accession position
1 LCL031e05_r AV627753 1 267
2 MXL091b07_r BP098301 152 609




Chlamydomonas reinhardtii
Kazusa DNA Research Institute