Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003149A_C01 KCC003149A_c01
(235 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P22367|MSAS_PENPA 6-methylsalicylic acid synthase (6-MSAS) gi... 32 3.5
ref|NP_849444.1| Rieske [2Fe-2S] domain-containing protein [Arab... 30 7.8
>sp|P22367|MSAS_PENPA 6-methylsalicylic acid synthase (6-MSAS) gi|101819|pir||S13178
6-methylsalicylic acid synthase - Penicillium
griseofulvum gi|3212|emb|CAA39295.1| 6-Methyl salicylic
acid Synthase [Penicillium griseofulvum]
Length = 1774
Score = 31.6 bits (70), Expect = 3.5
Identities = 18/41 (43%), Positives = 20/41 (47%), Gaps = 1/41 (2%)
Frame = +2
Query: 104 HWLHTIDLLKQSAAELGSRPVTPGVWATHV-LTPWMRSLIW 223
H LH+I L AE+ PG WAT V T WM IW
Sbjct: 867 HILHSIAQLHCRGAEVNWAAQMPGRWATGVPTTTWMHKPIW 907
>ref|NP_849444.1| Rieske [2Fe-2S] domain-containing protein [Arabidopsis thaliana]
gi|17065310|gb|AAL32809.1| Unknown protein [Arabidopsis
thaliana] gi|27311961|gb|AAO00946.1| Unknown protein
[Arabidopsis thaliana]
Length = 559
Score = 30.4 bits (67), Expect = 7.8
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = -1
Query: 211 PHPGGEYMSCPYSRCYGP*AQLSCRLLQKIN--GMKPMARDSQNV*NK 74
P P G+Y+ C + C+ P L L +KI+ G KP+ + + + NK
Sbjct: 260 PKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNK 307
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,811,456
Number of Sequences: 1537769
Number of extensions: 4132232
Number of successful extensions: 9793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9793
length of database: 498,525,298
effective HSP length: 53
effective length of database: 417,023,541
effective search space used: 10008564984
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
