Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003122A_C01 KCC003122A_c01
(476 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 43 0.002
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 43 0.002
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 43 0.002
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 43 0.002
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 41 0.006
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/125 (33%), Positives = 58/125 (45%), Gaps = 2/125 (1%)
Frame = +3
Query: 108 APSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGS 287
+P+T+G R ++ R+ R R+P+ P R RSRS TP+ R R+ R
Sbjct: 566 SPATRGRSRSRTPARRGRS----RSRTPARRRSRSRTPTRRRSRSRTPARR-GRSRSRTP 620
Query: 288 SRRRSCIWA*SATRPPLRRTPPCWQPS--SGHERRCWPSRPRCASTSRSTALTSRKSLAA 461
+RRR S TR P+RR P+ SG R P+R R S SR+ A R
Sbjct: 621 ARRR------SRTRSPVRRRSRSRSPARRSGRSRSRTPAR-RGRSRSRTPARRGRSRSRT 673
Query: 462 PSTTS 476
P+ S
Sbjct: 674 PARRS 678
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAAR-----PRSPSGAYLPWYLPQRWRSRSSTPSLRCPRAS 275
P+ + R R ++ R+ AR R+P+ P R RSRS +P+ R R+
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR 648
Query: 276 CRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSL 455
R +RR S +R P RR G R P+R S SR+ A R
Sbjct: 649 SRTPARRGR-----SRSRTPARR---------GRSRSRTPARRSGRSRSRTPARRGRSRS 694
Query: 456 AAP 464
P
Sbjct: 695 RTP 697
Score = 31.2 bits (69), Expect = 6.5
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +3
Query: 222 QRWRSRSSTPSLRCPRASCRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSR 401
+R RSR+S S R R+ +RRRS + R RTPP + S R P
Sbjct: 1909 RRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRS---RSRTPPV 1965
Query: 402 PRCASTSRSTALTSRKSLAAPS 467
R S SR++ +T R+S + S
Sbjct: 1966 TRRRSRSRTSPITRRRSRSRTS 1987
Score = 31.2 bits (69), Expect = 6.5
Identities = 33/115 (28%), Positives = 49/115 (41%)
Frame = +3
Query: 105 GAPSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRG 284
G+ ST+ +++ R G + P + + P P+R RS S+P L R
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTP---PRR-RSSRSSPELTRKARLSRR 1706
Query: 285 SSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRK 449
S S S T P RR+P P + R SR R +++S T TSR+
Sbjct: 1707 SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSR--SSRRRRSASSPRTKTTSRR 1759
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/125 (33%), Positives = 58/125 (45%), Gaps = 2/125 (1%)
Frame = +3
Query: 108 APSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGS 287
+P+T+G R ++ R+ R R+P+ P R RSRS TP+ R R+ R
Sbjct: 566 SPATRGRSRSRTPARRGRS----RSRTPARRRSRSRTPTRRRSRSRTPARR-GRSRSRTP 620
Query: 288 SRRRSCIWA*SATRPPLRRTPPCWQPS--SGHERRCWPSRPRCASTSRSTALTSRKSLAA 461
+RRR S TR P+RR P+ SG R P+R R S SR+ A R
Sbjct: 621 ARRR------SRTRSPVRRRSRSRSPARRSGRSRSRTPAR-RGRSRSRTPARRGRSRSRT 673
Query: 462 PSTTS 476
P+ S
Sbjct: 674 PARRS 678
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAAR-----PRSPSGAYLPWYLPQRWRSRSSTPSLRCPRAS 275
P+ + R R ++ R+ AR R+P+ P R RSRS +P+ R R+
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR 648
Query: 276 CRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSL 455
R +RR S +R P RR G R P+R S SR+ A R
Sbjct: 649 SRTPARRGR-----SRSRTPARR---------GRSRSRTPARRSGRSRSRTPARRGRSRS 694
Query: 456 AAP 464
P
Sbjct: 695 RTP 697
Score = 31.2 bits (69), Expect = 6.5
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +3
Query: 222 QRWRSRSSTPSLRCPRASCRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSR 401
+R RSR+S S R R+ +RRRS + R RTPP + S R P
Sbjct: 1909 RRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRS---RSRTPPV 1965
Query: 402 PRCASTSRSTALTSRKSLAAPS 467
R S SR++ +T R+S + S
Sbjct: 1966 TRRRSRSRTSPITRRRSRSRTS 1987
Score = 31.2 bits (69), Expect = 6.5
Identities = 33/115 (28%), Positives = 49/115 (41%)
Frame = +3
Query: 105 GAPSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRG 284
G+ ST+ +++ R G + P + + P P+R RS S+P L R
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTP---PRR-RSSRSSPELTRKARLSRR 1706
Query: 285 SSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRK 449
S S S T P RR+P P + R SR R +++S T TSR+
Sbjct: 1707 SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSR--SSRRRRSASSPRTKTTSRR 1759
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/125 (33%), Positives = 58/125 (45%), Gaps = 2/125 (1%)
Frame = +3
Query: 108 APSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGS 287
+P+T+G R ++ R+ R R+P+ P R RSRS TP+ R R+ R
Sbjct: 356 SPATRGRSRSRTPARRGRS----RSRTPARRRSRSRTPTRRRSRSRTPARR-GRSRSRTP 410
Query: 288 SRRRSCIWA*SATRPPLRRTPPCWQPS--SGHERRCWPSRPRCASTSRSTALTSRKSLAA 461
+RRR S TR P+RR P+ SG R P+R R S SR+ A R
Sbjct: 411 ARRR------SRTRSPVRRRSRSRSPARRSGRSRSRTPAR-RGRSRSRTPARRGRSRSRT 463
Query: 462 PSTTS 476
P+ S
Sbjct: 464 PARRS 468
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAAR-----PRSPSGAYLPWYLPQRWRSRSSTPSLRCPRAS 275
P+ + R R ++ R+ AR R+P+ P R RSRS +P+ R R+
Sbjct: 379 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR 438
Query: 276 CRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSL 455
R +RR S +R P RR G R P+R S SR+ A R
Sbjct: 439 SRTPARRGR-----SRSRTPARR---------GRSRSRTPARRSGRSRSRTPARRGRSRS 484
Query: 456 AAP 464
P
Sbjct: 485 RTP 487
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/125 (33%), Positives = 58/125 (45%), Gaps = 2/125 (1%)
Frame = +3
Query: 108 APSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGS 287
+P+T+G R ++ R+ R R+P+ P R RSRS TP+ R R+ R
Sbjct: 531 SPATRGRSRSRTPARRGRS----RSRTPARRRSRSRTPTRRRSRSRTPARR-GRSRSRTP 585
Query: 288 SRRRSCIWA*SATRPPLRRTPPCWQPS--SGHERRCWPSRPRCASTSRSTALTSRKSLAA 461
+RRR S TR P+RR P+ SG R P+R R S SR+ A R
Sbjct: 586 ARRR------SRTRSPVRRRSRSRSPARRSGRSRSRTPAR-RGRSRSRTPARRGRSRSRT 638
Query: 462 PSTTS 476
P+ S
Sbjct: 639 PARRS 643
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAAR-----PRSPSGAYLPWYLPQRWRSRSSTPSLRCPRAS 275
P+ + R R ++ R+ AR R+P+ P R RSRS +P+ R R+
Sbjct: 554 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSR 613
Query: 276 CRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSL 455
R +RR S +R P RR G R P+R S SR+ A R
Sbjct: 614 SRTPARRGR-----SRSRTPARR---------GRSRSRTPARRSGRSRSRTPARRGRSRS 659
Query: 456 AAP 464
P
Sbjct: 660 RTP 662
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 41.2 bits (95), Expect = 0.006
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 108 APSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGS 287
+P+T+G R ++ R+ R R+P+ P R RSRS TP+ R R+ R
Sbjct: 467 SPATRGRSRSRTPARRGRS----RSRTPARRRSRSRTPARRRSRSRTPARR-GRSRSRTP 521
Query: 288 SRRRSCIWA*SATRPPLRRTPPCWQPS--SGHERRCWPSRPRCASTSRSTALTSRKSLAA 461
+RRR S TR P+RR + SG R P+R S SR+ A R
Sbjct: 522 TRRR------SRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRT 575
Query: 462 PSTTS 476
P+ S
Sbjct: 576 PARRS 580
Score = 32.3 bits (72), Expect = 2.9
Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +3
Query: 114 STKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCRGSSR 293
S + R R + R+ R RS S A R RSRS TP + R+ R +R
Sbjct: 1744 SRRRSRSRTSPVSRRRSRSVNRRRSRSRASPV----SRRRSRSRTPPVTRRRSRSRTPTR 1799
Query: 294 RRSCIWA*SATRPPLR-RTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSLAAPS 467
RRS TR R RTPP + S R P R S SR++ +T R+S + S
Sbjct: 1800 RRSRSRTPPVTRRRSRSRTPPVTRRRS--RSRTSPVTRR-RSRSRTSPVTRRRSRSRTS 1855
Score = 32.0 bits (71), Expect = 3.8
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAAR-----PRSPSGAYLPWYLPQRWRSRSSTPSLRCPRAS 275
P+ + R R ++ R+ AR R+P+ P R RSRS + + R R+
Sbjct: 490 PARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSR 549
Query: 276 CRGSSRRRSCIWA*SATRPPLRRTPPCWQPSSGHERRCWPSRPRCASTSRSTALTSRKSL 455
R +RR S +R P RR G R P+R S SR+ A R
Sbjct: 550 SRTPARRSGR----SRSRTPARR---------GRSRSRTPARRSARSRSRTPARRGRSRS 596
Query: 456 AAPS 467
P+
Sbjct: 597 RTPA 600
Score = 32.0 bits (71), Expect = 3.8
Identities = 40/123 (32%), Positives = 52/123 (41%), Gaps = 4/123 (3%)
Frame = +3
Query: 111 PSTKGGRGRRFQTKKDRAGVAARPRSPSGAYLPWYLPQRWRSRSSTPSLRCPRASCR-GS 287
PS + GR R TK+ R+ R R+P+ +R SRS +P R R++ R G
Sbjct: 379 PSHRAGRSRSPATKRGRS----RSRTPT---------KRGHSRSRSPQWRRSRSAQRWGK 425
Query: 288 SRRRSCIWA*SATRPPLRRTP--PCWQPSSGHERRCWP-SRPRCASTSRSTALTSRKSLA 458
SR S R R+P P W S +RR S R S SRS A R
Sbjct: 426 SR--------SPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 477
Query: 459 APS 467
P+
Sbjct: 478 TPA 480
