KCC003119A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003119A_C01 KCC003119A_c01
gccgatgatattccagctcgcatCACTTGCATTACGACGTAGCGTGCGAACCGTAGCTGA
GAGCGCAGGCCTATACCAACTCGCGACTTCCAGGCCGGCTCTTGCGCCTTCTCTATACCG
AACATTCTTTTCGAGCCCCACATTACAAATGCCTACGGTGGGAGTGAACCGCGATAAGCT
ATTCGAGAAGCTGGGCAAGGTCTACACCGATGAGGAGTTCGACCACCTCTGCTTCGAGTA
TGGCATCGAGCTGGACGATGTGACCTCTGAGAAGGAGATGCTCCGGAAGGAGCTGGCCAG
CGCCATGGCCAAGGGCGGCGACAACAAACTGGCGGCGGAGGCGGCGGCGGCCAGCGAGGA
GGTCATCTACAAGATCGACATCCCTGCCAACCGCTACGACATGCTGTGCGTGGAGGGCAT
CGCGCGCGCGTTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003119A_C01 KCC003119A_c01
         (434 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_217455.2| similar to Phenylalanyl-tRNA synthetase beta ch...   115  2e-25
sp|Q9WUA2|SYFB_MOUSE Phenylalanyl-tRNA synthetase beta chain (Ph...   114  2e-25
sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chain (Ph...   114  2e-25
ref|NP_035941.2| phenylalanine-tRNA synthetase-like; phenylalani...   114  2e-25
dbj|BAC36412.1| unnamed protein product [Mus musculus]                114  2e-25

>ref|XP_217455.2| similar to Phenylalanyl-tRNA synthetase beta chain
           (Phenylalanine--tRNA ligase beta chain) (PheRS) [Rattus
           norvegicus]
          Length = 589

 Score =  115 bits (287), Expect = 2e-25
 Identities = 54/95 (56%), Positives = 71/95 (73%)
 Frame = +2

Query: 149 MPTVGVNRDKLFEKLGKVYTDEEFDHLCFEYGIELDDVTSEKEMLRKELASAMAKGGDNK 328
           MPTV V RD LF+ LG+ YTDEEFD LCFE+G+ELD++TSEK+++ KE  +  A+G    
Sbjct: 1   MPTVSVKRDLLFQVLGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGNVKAQG---- 56

Query: 329 LAAEAAAASEEVIYKIDIPANRYDMLCVEGIARAL 433
                  AS+ V+YKID+PANRYD+LC+EG+AR L
Sbjct: 57  -------ASDVVLYKIDVPANRYDLLCLEGLARGL 84

>sp|Q9WUA2|SYFB_MOUSE Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS) gi|4633656|gb|AAD26855.1|AF123263_1
           phenylalanyl tRNA synthetase beta subunit [Mus musculus]
           gi|16741161|gb|AAH16428.1| Phenylalanine-tRNA
           synthetase-like [Mus musculus]
          Length = 589

 Score =  114 bits (286), Expect = 2e-25
 Identities = 54/95 (56%), Positives = 70/95 (72%)
 Frame = +2

Query: 149 MPTVGVNRDKLFEKLGKVYTDEEFDHLCFEYGIELDDVTSEKEMLRKELASAMAKGGDNK 328
           MPTV V RD LF+ LG+ YTDEEFD LCFE+G+ELD++TSEK+++ KE     A+G    
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQG---- 56

Query: 329 LAAEAAAASEEVIYKIDIPANRYDMLCVEGIARAL 433
                  AS+ V+YKID+PANRYD+LC+EG+AR L
Sbjct: 57  -------ASDVVLYKIDVPANRYDLLCLEGLARGL 84

>sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS) (HSPC173) gi|4104933|gb|AAD02220.1|
           putative phenylalanyl-tRNA synthetase beta-subunit;
           PheHB [Homo sapiens] gi|17389486|gb|AAH17783.1|
           Phenylalanyl-tRNA synthetase beta-subunit [Homo sapiens]
          Length = 589

 Score =  114 bits (286), Expect = 2e-25
 Identities = 54/95 (56%), Positives = 70/95 (72%)
 Frame = +2

Query: 149 MPTVGVNRDKLFEKLGKVYTDEEFDHLCFEYGIELDDVTSEKEMLRKELASAMAKGGDNK 328
           MPTV V RD LF+ LG+ YTDEEFD LCFE+G+ELD++TSEKE++ KE  +         
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGN--------- 51

Query: 329 LAAEAAAASEEVIYKIDIPANRYDMLCVEGIARAL 433
              +AA AS+ V+YKID+PANRYD+LC+EG+ R L
Sbjct: 52  --VKAAGASDVVLYKIDVPANRYDLLCLEGLVRGL 84

>ref|NP_035941.2| phenylalanine-tRNA synthetase-like; phenylalanine tRNA synthetase
           alpha; PheRS alpha [Mus musculus]
           gi|12845588|dbj|BAB26810.1| unnamed protein product [Mus
           musculus] gi|26337355|dbj|BAC32363.1| unnamed protein
           product [Mus musculus]
          Length = 589

 Score =  114 bits (286), Expect = 2e-25
 Identities = 54/95 (56%), Positives = 70/95 (72%)
 Frame = +2

Query: 149 MPTVGVNRDKLFEKLGKVYTDEEFDHLCFEYGIELDDVTSEKEMLRKELASAMAKGGDNK 328
           MPTV V RD LF+ LG+ YTDEEFD LCFE+G+ELD++TSEK+++ KE     A+G    
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQG---- 56

Query: 329 LAAEAAAASEEVIYKIDIPANRYDMLCVEGIARAL 433
                  AS+ V+YKID+PANRYD+LC+EG+AR L
Sbjct: 57  -------ASDVVLYKIDVPANRYDLLCLEGLARGL 84

>dbj|BAC36412.1| unnamed protein product [Mus musculus]
          Length = 589

 Score =  114 bits (286), Expect = 2e-25
 Identities = 54/95 (56%), Positives = 70/95 (72%)
 Frame = +2

Query: 149 MPTVGVNRDKLFEKLGKVYTDEEFDHLCFEYGIELDDVTSEKEMLRKELASAMAKGGDNK 328
           MPTV V RD LF+ LG+ YTDEEFD LCFE+G+ELD++TSEK+++ KE     A+G    
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQG---- 56

Query: 329 LAAEAAAASEEVIYKIDIPANRYDMLCVEGIARAL 433
                  AS+ V+YKID+PANRYD+LC+EG+AR L
Sbjct: 57  -------ASDVVLYKIDVPANRYDLLCLEGLARGL 84



EST assemble image


clone accession position
1 LCL032g08_r AV627841 1 434
2 LCL045h03_r AV628701 24 306
3 LCL017h05_r AV626907 77 380




Chlamydomonas reinhardtii
Kazusa DNA Research Institute