KCC003114A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003114A_C01 KCC003114A_c01
gtaatgttcagGTGAACTACGCAATTCAACATAAGATACAACTGCAGACAGACAGCACGC
GTGAGCTGAGCGCGGGATTTGTTGTAGGCTCGGAGCTGCTCGCTCGGAGCCTGACAAAGC
TGGCGAGGAGCTCCAACGACATACCTTCGAGTACCAATTCTCATACATTTCTGGAGGAGC
GCGAGCGAAGCCTCCGCATTTAGCGTGCAAATGTTGTTTCTCATTACTGGCCCTGACGCG
ACTTCGGATGCCAGCATGCATGCCCAAGATGAAGTTTCGGGGGCAGTCCAAAGTCAGGAC
ACGACGCAGCTGCGTTTGGCAGCACTCTTCATCATTTTAATAGCGGGACTATGCGGCGCG
CTGCCGCCGCTGTTCATGAAGGCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCT
CGCTCGCTGGCGGCCGGAGTCATCCTGGCGCTGGCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003114A_C01 KCC003114A_c01
         (458 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB93464.1| possible mucin precursor [Leishmania major]            36  0.23
ref|XP_311270.1| ENSANGP00000017524 [Anopheles gambiae] gi|21294...    35  0.31
ref|XP_304048.1| hypothetical protein XP_304048 [Homo sapiens]         35  0.40
ref|NP_849546.1| iron-regulated transporter (IRT1) [Arabidopsis ...    35  0.40
ref|NP_567590.2| iron-regulated transporter (IRT1) [Arabidopsis ...    35  0.52

>emb|CAB93464.1| possible mucin precursor [Leishmania major]
          Length = 1899

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 25/59 (42%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
 Frame = +3

Query: 285  SPKSGHDAAAFGSTLHHFNS---GTMRRAAAAVHEGVPQPRRPGLSAISLAGGRSHPGA 452
            S +   D AA  + LHH      GT+ R  A V E  PQ +RP LS   LAG   H GA
Sbjct: 1348 SLRENDDVAALSTDLHHTRGAALGTVPRKIAVVVEVGPQ-QRPRLSERGLAGATRHDGA 1405

>ref|XP_311270.1| ENSANGP00000017524 [Anopheles gambiae] gi|21294667|gb|EAA06812.1|
           ENSANGP00000017524 [Anopheles gambiae str. PEST]
          Length = 691

 Score = 35.4 bits (80), Expect = 0.31
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 372 VHEGVPQPRRPGLSAISLAGGRSHPGAG 455
           V  G P  +RPG    S+ GGR HPGAG
Sbjct: 556 VRRGPPVVKRPGAGTPSMVGGRPHPGAG 583

>ref|XP_304048.1| hypothetical protein XP_304048 [Homo sapiens]
          Length = 196

 Score = 35.0 bits (79), Expect = 0.40
 Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -2

Query: 457 APAPG*LRP---PASEIAERPGRRGCGTPS*TAAAARR 353
           APAPG  RP   PA  IA+ PGRR  G PS +AAAA R
Sbjct: 110 APAPGTRRPFGRPA--IADLPGRRSNGRPSASAAAAAR 145

>ref|NP_849546.1| iron-regulated transporter (IRT1) [Arabidopsis thaliana]
           gi|21592706|gb|AAM64655.1| Fe(II) transport protein
           [Arabidopsis thaliana]
          Length = 211

 Score = 35.0 bits (79), Expect = 0.40
 Identities = 28/97 (28%), Positives = 44/97 (44%), Gaps = 7/97 (7%)
 Frame = +1

Query: 178 SASEASAFSVQMLFLITGPDATSDASMHAQDEVSG-----AVQSQDTTQLRLAALFIILI 342
           +++ A       L LI    A S A+  A +E         V       L++ A+F+ILI
Sbjct: 2   ASNSALLMKTIFLVLIFVSFAISPATSTAPEECGSESANPCVNKAKALPLKVIAIFVILI 61

Query: 343 AGLCGALPPLFMK--AFRNHDGLASQLSRSLAAGVIL 447
           A + G   PLF +  +F   DG    + +  A+G+IL
Sbjct: 62  ASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIIL 98

>ref|NP_567590.2| iron-regulated transporter (IRT1) [Arabidopsis thaliana]
           gi|37079172|sp|Q38856|IRT1_ARATH Fe(II) transport
           protein 1 precursor (Iron-regulated transporter 1)
           gi|7488126|pir||T04750 probable iron transport protein
           T16H5.50 - Arabidopsis thaliana
           gi|1353266|gb|AAB01678.1| Fe(II) transport protein
           gi|3250678|emb|CAA19686.1| Fe(II) transport protein
           [Arabidopsis thaliana] gi|7268765|emb|CAB78971.1| Fe(II)
           transport protein [Arabidopsis thaliana]
           gi|1589711|prf||2211425A Zn transporter
          Length = 339

 Score = 34.7 bits (78), Expect = 0.52
 Identities = 24/73 (32%), Positives = 36/73 (48%), Gaps = 3/73 (4%)
 Frame = +1

Query: 238 ATSDASMHAQDEVSG-AVQSQDTTQLRLAALFIILIAGLCGALPPLFMK--AFRNHDGLA 408
           ATS A      E +   V       L++ A+F+ILIA + G   PLF +  +F   DG  
Sbjct: 18  ATSTAPEECGSESANPCVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNI 77

Query: 409 SQLSRSLAAGVIL 447
             + +  A+G+IL
Sbjct: 78  FTIIKCFASGIIL 90



EST assemble image


clone accession position
1 MXL021g09_r BP094353 1 333
2 LCL016h05_r AV626863 12 283
3 LCL077f04_r AV630346 12 354
4 LCL086b10_r AV630909 20 458




Chlamydomonas reinhardtii
Kazusa DNA Research Institute