KCC003113A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003113A_C01 KCC003113A_c01
ctggatgatccacctgtacgacaacggtatcaacggcatcctggccgatgagatgggtct
gggcaagacgctccagaccaTCTCGCTGGTGGCCTACCTGTACGAGTACCGCGGCATCAC
TGGGCCGCACATCGTCATCACGCCCAAGTCCACGCTGGGCAACTGGGTGAACGAGTTCAA
GCGCTTCGCGCCCATCATCCGCGTCACCAAGTTCCACGGCAACGCGGACGAGCGCATGAT
CCAGAAGGAGACCACCTGCGCGCCCGGCCGCTTCGACGTGGTGGTGACGTCATACGAGAT
GGTGATCAAGGAGAAGAACCACTTTAAGCGCTTCCACTGGCGCTACATCATCATCGACGA
GGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGGTGGTCCGCCAGCTCAAGAC
CAACTACCGGCTGCTGATCACGGGCACGCCGCTACAGAACAACCTGCACGAGCTGTGGGC
GCTGCTCAACTTCCTGCTGCCCGAGATCTTCAGCAGCGCGGAGAAGTTCGAGGAGTGGTT
CAGCCTGGGCGACGGAAGCAAGGAGAAGGAGGCGGAGGTGGTGCAGCAGCTGCACAAGGT
GCTGCGCCCCTTCCTGCTGCGCCGTGTCAAGTCAGACGTGGAGCGCGGCCTGCCGCCCAA
GAAGGAGACCATCCTCAAGATCGGCATGAGCGAGATGCAGAAGAAGTGGTACGCGGCTCT
GCTGCAGAAGGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003113A_C01 KCC003113A_c01
         (734 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]          369  e-101
ref|NP_187291.2| DNA-dependent ATPase, putative [Arabidopsis tha...   369  e-101
gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidops...   369  e-101
ref|NP_850847.1| DNA-dependent ATPase, putative [Arabidopsis tha...   369  e-101
ref|NP_568365.2| DNA-dependent ATPase, putative [Arabidopsis tha...   369  e-101

>gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
          Length = 1055

 Score =  369 bits (948), Expect = e-101
 Identities = 178/244 (72%), Positives = 205/244 (83%)
 Frame = +2

Query: 2   WMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLGNWVNEFK 181
           W+I LY+NGINGILADEMGLGKTLQTISL+AYL+EYRGI GPH+V+ PKSTLGNW+NE +
Sbjct: 199 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 258

Query: 182 RFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHWRYIIIDE 361
           RF P++R  KF GN +ER   +E     G+FD+ VTS+EM IKEK   +RF WRYIIIDE
Sbjct: 259 RFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDE 318

Query: 362 AHRIKNENSRLSLVVRQLKTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAEKFEEWF 541
           AHRIKNENS LS  +R   TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE F+EWF
Sbjct: 319 AHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF 378

Query: 542 SLGDGSKEKEAEVVQQLHKVLRPFLLRRVKSDVERGLPPKKETILKIGMSEMQKKWYAAL 721
            +    +  + EVVQQLHKVLRPFLLRR+KSDVE+GLPPKKETILK+GMS+MQK++Y AL
Sbjct: 379 QI--SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKAL 436

Query: 722 LQKD 733
           LQKD
Sbjct: 437 LQKD 440

>ref|NP_187291.2| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1055

 Score =  369 bits (948), Expect = e-101
 Identities = 178/244 (72%), Positives = 205/244 (83%)
 Frame = +2

Query: 2   WMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLGNWVNEFK 181
           W+I LY+NGINGILADEMGLGKTLQTISL+AYL+EYRGI GPH+V+ PKSTLGNW+NE +
Sbjct: 199 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 258

Query: 182 RFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHWRYIIIDE 361
           RF P++R  KF GN +ER   +E     G+FD+ VTS+EM IKEK   +RF WRYIIIDE
Sbjct: 259 RFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDE 318

Query: 362 AHRIKNENSRLSLVVRQLKTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAEKFEEWF 541
           AHRIKNENS LS  +R   TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE F+EWF
Sbjct: 319 AHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF 378

Query: 542 SLGDGSKEKEAEVVQQLHKVLRPFLLRRVKSDVERGLPPKKETILKIGMSEMQKKWYAAL 721
            +    +  + EVVQQLHKVLRPFLLRR+KSDVE+GLPPKKETILK+GMS+MQK++Y AL
Sbjct: 379 QI--SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKAL 436

Query: 722 LQKD 733
           LQKD
Sbjct: 437 LQKD 440

>gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
          Length = 1057

 Score =  369 bits (948), Expect = e-101
 Identities = 178/244 (72%), Positives = 205/244 (83%)
 Frame = +2

Query: 2   WMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLGNWVNEFK 181
           W+I LY+NGINGILADEMGLGKTLQTISL+AYL+EYRGI GPH+V+ PKSTLGNW+NE +
Sbjct: 199 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 258

Query: 182 RFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHWRYIIIDE 361
           RF P++R  KF GN +ER   +E     G+FD+ VTS+EM IKEK   +RF WRYIIIDE
Sbjct: 259 RFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDE 318

Query: 362 AHRIKNENSRLSLVVRQLKTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAEKFEEWF 541
           AHRIKNENS LS  +R   TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE F+EWF
Sbjct: 319 AHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF 378

Query: 542 SLGDGSKEKEAEVVQQLHKVLRPFLLRRVKSDVERGLPPKKETILKIGMSEMQKKWYAAL 721
            +    +  + EVVQQLHKVLRPFLLRR+KSDVE+GLPPKKETILK+GMS+MQK++Y AL
Sbjct: 379 QI--SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKAL 436

Query: 722 LQKD 733
           LQKD
Sbjct: 437 LQKD 440

>ref|NP_850847.1| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1072

 Score =  369 bits (947), Expect = e-101
 Identities = 177/244 (72%), Positives = 205/244 (83%)
 Frame = +2

Query: 2   WMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLGNWVNEFK 181
           W+I LY+NGINGILADEMGLGKTLQTISL+AYL+EYRGI GPH+V+ PKSTLGNW+NE +
Sbjct: 204 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 263

Query: 182 RFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHWRYIIIDE 361
           RF P++R  KF GN +ER   +E     G+FD+ VTS+EM IKEK   +RF WRYIIIDE
Sbjct: 264 RFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDE 323

Query: 362 AHRIKNENSRLSLVVRQLKTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAEKFEEWF 541
           AHRIKNENS LS  +R   TNYRLLITGTPLQNNLHELWALLNFLLPE+FSSAE F+EWF
Sbjct: 324 AHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWF 383

Query: 542 SLGDGSKEKEAEVVQQLHKVLRPFLLRRVKSDVERGLPPKKETILKIGMSEMQKKWYAAL 721
            +    +  + EVVQQLHKVLRPFLLRR+KSDVE+GLPPKKETILK+GMS+MQK++Y AL
Sbjct: 384 QI--SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKAL 441

Query: 722 LQKD 733
           LQKD
Sbjct: 442 LQKD 445

>ref|NP_568365.2| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1069

 Score =  369 bits (947), Expect = e-101
 Identities = 177/244 (72%), Positives = 205/244 (83%)
 Frame = +2

Query: 2   WMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLGNWVNEFK 181
           W+I LY+NGINGILADEMGLGKTLQTISL+AYL+EYRGI GPH+V+ PKSTLGNW+NE +
Sbjct: 204 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 263

Query: 182 RFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHWRYIIIDE 361
           RF P++R  KF GN +ER   +E     G+FD+ VTS+EM IKEK   +RF WRYIIIDE
Sbjct: 264 RFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDE 323

Query: 362 AHRIKNENSRLSLVVRQLKTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAEKFEEWF 541
           AHRIKNENS LS  +R   TNYRLLITGTPLQNNLHELWALLNFLLPE+FSSAE F+EWF
Sbjct: 324 AHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWF 383

Query: 542 SLGDGSKEKEAEVVQQLHKVLRPFLLRRVKSDVERGLPPKKETILKIGMSEMQKKWYAAL 721
            +    +  + EVVQQLHKVLRPFLLRR+KSDVE+GLPPKKETILK+GMS+MQK++Y AL
Sbjct: 384 QI--SGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKAL 441

Query: 722 LQKD 733
           LQKD
Sbjct: 442 LQKD 445



EST assemble image


clone accession position
1 LCL036d12_r AV628085 1 483
2 LCL016f10_r AV626851 134 382
3 MXL095h09_r BP098588 157 539
4 MXL034c07_r BP095005 159 501
5 LCL072f11_r AV630082 243 639
6 LCL038b06_r AV628195 274 432
7 MXL097b10_r BP098670 373 734




Chlamydomonas reinhardtii
Kazusa DNA Research Institute